Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G41360.1 | Thale cress | cytosol | 95.18 | 95.3 |
| CDY39742 | Canola | cytosol | 79.01 | 94.25 |
| Bra025503.1-P | Field mustard | cytosol | 93.09 | 93.09 |
| CDY58956 | Canola | cytosol | 92.96 | 92.96 |
| Bra028496.1-P | Field mustard | cytosol | 91.13 | 91.49 |
| CDY45389 | Canola | nucleus | 74.97 | 88.87 |
| VIT_02s0025g00110.t01 | Wine grape | cytosol | 86.7 | 86.25 |
| Solyc08g081340.2.1 | Tomato | nucleus | 86.18 | 86.07 |
| PGSC0003DMT400032126 | Potato | cytosol | 81.62 | 85.64 |
| KRH59943 | Soybean | nucleus | 85.14 | 85.03 |
| KRH41216 | Soybean | nucleus | 85.01 | 84.9 |
| TraesCS3D01G261400.1 | Wheat | cytosol | 82.53 | 83.4 |
| Os01t0691600-01 | Rice | cytosol | 62.58 | 82.76 |
| TraesCS3A01G261300.1 | Wheat | cytosol | 82.4 | 82.72 |
| TraesCS3B01G294400.1 | Wheat | cytosol | 82.27 | 82.48 |
| EES01302 | Sorghum | cytosol | 81.36 | 81.36 |
| Zm00001d043797_P020 | Maize | cytosol | 81.36 | 81.36 |
| KRH01148 | Soybean | cytosol | 11.21 | 76.11 |
| HORVU3Hr1G064300.26 | Barley | plastid | 81.75 | 75.18 |
| GSMUA_Achr2P04330_001 | Banana | nucleus, plastid | 12.26 | 47.0 |
Protein Annotations
| MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 | EntrezGene:834139 | ProteinID:AAT36215.1 | ProteinID:AED94670.1 |
| ArrayExpress:AT5G41370 | EnsemblPlantsGene:AT5G41370 | RefSeq:AT5G41370 | TAIR:AT5G41370 | RefSeq:AT5G41370-TAIR-G | EnsemblPlants:AT5G41370.1 |
| TAIR:AT5G41370.1 | EMBL:AY039547 | EMBL:AY113008 | Unigene:At.6482 | ProteinID:BAB08509.1 | InterPro:ERCC3_RAD25_C |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006289 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006367 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009411 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0032508 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | RefSeq:NP_568592.1 | InterPro:P-loop_NTPase | PFAM:PF04851 | PFAM:PF13625 | PFAM:PF16203 |
| PO:PO:0000003 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007131 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 |
| UniProt:Q38861 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00603 | EMBL:U29168 |
| UniParc:UPI00000A4CB3 | InterPro:XPB/Ssl2 | InterPro:XPB/Ssl2_N | Symbol:XPB1 | SEG:seg | : |
Description
XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
Coordinates
chr5:+:16551119..16556038
Molecular Weight (calculated)
87067.2 Da
IEP (calculated)
8.255
GRAVY (calculated)
-0.536
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.