CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028496.1-P	Field mustard	cytosol	95.67	81.02
CDY58956	Canola	cytosol	93.2	78.62
CDY39742	Canola	cytosol	76.2	76.67
AT5G41370.1	Thale cress	cytosol	88.87	74.97
AT5G41360.1	Thale cress	cytosol	87.94	74.28
Solyc08g081340.2.1	Tomato	nucleus	80.68	67.97
VIT_02s0025g00110.t01	Wine grape	cytosol	80.99	67.96
KRH41216	Soybean	nucleus	80.53	67.84
KRH59943	Soybean	nucleus	80.53	67.84
PGSC0003DMT400032126	Potato	cytosol	75.42	66.76
TraesCS3D01G261400.1	Wheat	cytosol	77.13	65.74
TraesCS3A01G261300.1	Wheat	cytosol	77.43	65.58
TraesCS3B01G294400.1	Wheat	cytosol	77.13	65.23
EES01302	Sorghum	cytosol	76.51	64.54
Zm00001d043797_P020	Maize	cytosol	76.51	64.54
Os01t0691600-01	Rice	cytosol	55.49	61.9
HORVU3Hr1G064300.26	Barley	plastid	76.51	59.35
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	13.6	44.0
KRH01148	Soybean	cytosol	2.16	12.39

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	GO:A0A078I7L0	UniProt:A0A078I7L0	EnsemblPlants:CDY45389
ProteinID:CDY45389	ProteinID:CDY45389.1	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	EnsemblPlantsGene:GSBRNA2T00081897001
InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625
PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	SMART:SM00487
SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI0004EE6F99	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	SEG:seg

Description

BnaC06g42440DBnaC06g42440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7L0]

Coordinates

chrLK032623:-:196654..203262

Molecular Weight (calculated)

72551.8 Da

IEP (calculated)

7.899

GRAVY (calculated)

-0.413

Length

647 amino acids

Sequence
(BLAST)

001: MKYGGKMKNI QNEEYYMGDD DGKSEGEKMN TDFSKLELKP DHVNRPLWAC ADGRIFLETY SPLYKQAYDF LIAIAEPVCR SSLSLRLYCY NLTPHSLYAA
101: VSVGLETETI ISVLNKLSKT KLPNDMIDFI IASTANYGKV KLVLKKNRYF IESPFPEVLK KLGNDGLISK ARLYSDPYGG DGFTIGKTSG ELEAGPGELL
201: NAAELAAAAQ EKETHSFEID PAQVEIVKQR CLPSELNYPM LEEYDFRNDN VNPDLDMELK PHAQPRPYQE KSLSKMFGNG RARSGIIVLP CGAGKSLVGV
301: SAAARIKKSC LCLAMNAVSV DQWAFQFKLW STLRDDQICR FTSDSKERFR GNAGVVVTTY NMVAFGGKRS EESEKIIEEM RNREWGLLLM DEVHVVPAQM
401: FRKVISITKS HCKLGLTATL VREDEKITDL NFLIGPKLYE ANWLDLVKGG FIANVQCAEV GDNSIDIPEA NVIIQISSHA GSRRQEAQRL GRILRAKGKI
501: EDRMAGGKEE YNAFFYSLVS TDTQEIYYST KRQQFLIDQG YSFKVITSFP PPDAGSSLSY HSQEEQLSLL AKVLNAGDDL VGLEQLEEDI DGKALQATRR
601: RKGVMSVMSG AKGFVYQEFN SGRHKSSGQQ FKKPKDPTKR HQLFKTR

Best Arabidopsis Sequence Match ( AT5G41360.1 )
(BLAST)

001: MGNDERKRPT KKMKYGGKDD QKMKNIQNVE DYYDDADEDS RDGEGEEKRR DFTDLELKPD HGNRPLWACA DGKIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPG EIIDFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFT SEPYYGGDGF
201: TIGKTSGELE AGPGELLNEA ELAAAAEEKE THSFEIDPAL VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AYQFKLWSTI KDDQICRFTS DSKERFRGNA GVVVTTYNMI AFGGKRSEEA EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DEKITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKT VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLGYH SQEEQLSLLG KVLNAGDDMV
701: GLEQLEEDTD GKALKTRRSM GSMSAMSGAN GRVYMEYNSG RQKSGNQSKK PKDPTKRHNI FKKRYV

Arabidopsis Description

XPB2XPB2 [Source:UniProtKB/TrEMBL;Acc:A0A178UFA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.