CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043797_P020	Maize	cytosol	97.91	97.91
TraesCS3A01G261300.1	Wheat	cytosol	92.96	93.32
Os01t0691600-01	Rice	cytosol	70.4	93.1
TraesCS3B01G294400.1	Wheat	cytosol	92.83	93.07
TraesCS3D01G261400.1	Wheat	cytosol	92.05	93.02
GSMUA_AchrUn_...	Banana	cytosol	84.88	85.21
HORVU3Hr1G064300.26	Barley	plastid	91.66	84.29
VIT_02s0025g00110.t01	Wine grape	cytosol	83.44	83.01
CDY39742	Canola	cytosol	69.1	82.43
AT5G41370.1	Thale cress	cytosol	81.36	81.36
PGSC0003DMT400032126	Potato	cytosol	77.44	81.26
Solyc08g081340.2.1	Tomato	nucleus	81.36	81.25
AT5G41360.1	Thale cress	cytosol	80.83	80.94
KRH41216	Soybean	nucleus	80.18	80.08
KRH59943	Soybean	nucleus	80.05	79.95
Bra025503.1-P	Field mustard	cytosol	79.53	79.53
CDY58956	Canola	cytosol	79.27	79.27
Bra028496.1-P	Field mustard	cytosol	78.36	78.66
CDY45389	Canola	nucleus	64.54	76.51
KRH01148	Soybean	cytosol	10.04	68.14

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	EntrezGene:8063093	UniProt:C5XGX0	EnsemblPlants:EES01302
ProteinID:EES01302	ProteinID:EES01302.1	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:Helicase/UvrB_N
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF04851
PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274
PANTHER:PTHR11274:SF0	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G264100	SUPFAM:SSF52540	unigene:Sbi.3727
TIGRFAMs:TIGR00603	UniParc:UPI0001A846DB	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	RefSeq:XP_002456182.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:60121128..60128012

Molecular Weight (calculated)

86470.4 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.417

Length

767 amino acids

Sequence
(BLAST)

001: MAGGDGDRHR GPKRHKSSAP SKAALVDESA EFDYADDFDD DAHDADMEVK KRDFTKLELK VDHASRPLWA CADGRIFLET FSPLYKQAYD FLIAIAEPVC
101: RPESMHEYNL TPHSLYAAVS VGLETSTIIS VLSKLSKTKL PREIIDFIHA STANYGKVKL VLKKNRYFVE SPFPEVLSNL LRDEVISRAR ISPEDSLGAP
201: SFTVSKTSGQ IASGHEDLLN GMEIAAATED KETHSFEIDP SQVENVKQRC LPNALNYPML EEYDFRNDTV NPDLEMELKP QARPRPYQEK SLSKMFGNGR
301: ARSGIIVLPC GAGKSLVGVS AACRIKKSCL CLATNAVSVD QWAFQFKLWS TIKDEHISRF TSDNKEKFTG MASVVVTTYN MVAFGGKRSE DSEKIIEEIR
401: NREWGLLLMD EVHVVPAHMF RKVISITKSH CKLGLTATLV REDERITDLN FLIGPKLYEA NWLDLVKGGF IANVQCAEVW CPMTKEFFAE YLKKENSKKK
501: QVLYVMNPNK FRACEFLIRF HEQQRGDKII VFADNLFALT AYAMKLRKPM IFGATSHAER TRILYQFKNS PEVNTIFLSK VGDNSIDIPE ANVIIQISSH
601: AGSRRQEAQR LGRILRAKGK HQDRMAGGKE EYNAFFYSLV STDTQEMYYS TKRQQFLIDQ GYSFKVITSL PPPEEGPNLS FYTLDEQLEL LSKVLNAGDD
701: MIGVERLEED SDGKALLRAR RSAGSMSAFS GAGGMVYMEY STGKGKGAPK KHKDPSKRHH LFKKRYA

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.