Factsheet for Solyc08g081340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032126	Potato	cytosol	93.62	98.36
VIT_02s0025g00110.t01	Wine grape	cytosol	89.97	89.62
CDY39742	Canola	cytosol	72.27	86.31
AT5G41370.1	Thale cress	cytosol	86.07	86.18
KRH59943	Soybean	nucleus	86.07	86.07
KRH41216	Soybean	nucleus	85.94	85.94
AT5G41360.1	Thale cress	cytosol	84.38	84.6
Bra025503.1-P	Field mustard	cytosol	83.98	84.09
CDY58956	Canola	cytosol	83.85	83.96
TraesCS3D01G261400.1	Wheat	cytosol	81.9	82.87
Bra028496.1-P	Field mustard	cytosol	82.16	82.59
Os01t0691600-01	Rice	cytosol	62.24	82.41
TraesCS3A01G261300.1	Wheat	cytosol	81.9	82.33
TraesCS3B01G294400.1	Wheat	cytosol	81.77	82.09
Zm00001d043797_P020	Maize	cytosol	81.25	81.36
EES01302	Sorghum	cytosol	81.25	81.36
CDY45389	Canola	nucleus	67.97	80.68
KRH01148	Soybean	cytosol	11.07	75.22
HORVU3Hr1G064300.26	Barley	plastid	81.12	74.7
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	12.37	47.5

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K4CPD1
InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc08g081340.2	EnsemblPlants:Solyc08g081340.2.1	TIGRFAMs:TIGR00603	UniParc:UPI000276BEEC	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:64398279..64407863

Molecular Weight (calculated)

86982.1 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.489

Length

768 amino acids

Sequence
(BLAST)

001: MGHHGHGDKS RPSKKIKFAS KEEYRASTAD DDHYYPEEGG DDFHDGEREG KKMDFTKLEL KPDHGNRPLW ACADGRIFLE TFSPLYKQAY DFLIAIAEPV
101: CRPESMHEYN LTPHSLYAAV SVGLETETII AVLSKLSKTK LPKEMIDFIH ASTANYGKVK LVLKKNRYFI ESPFPEVLKR LLADDAIGKA RISSEGMHGK
201: DGFTVSKPVN EIEGGHDELI NEVDVAAAAE EKETHSFEID PAQVENVKQR CLPNALNYPM MEEYDFRNDT VNPDLDMELK PQAQPRPYQE KSLSKMFGNG
301: RARSGIIVLP CGAGKSLVGV SAASRIKKSC LCLATNAVSV DQWAFQFKLW STIREEQICR FTSDSKERFR GNVGVVVTTY NMVAFGGKRS EESEKIIEEI
401: RNREWGLLLM DEVHVVPAHM FRKVISITKS HCKLGLTATL VREDERITDL NFLIGPKLYE ANWLDLVKGG FIANVQCAEV WCPMTKEFFA EYLKKENSKK
501: RQALYVMNPN KFRACEFLIR FHEQQRGDKI IVFADNLFAL TEYAMKLRKP MIYGATSHVE RTKILEAFKT SKEVNTIFLS KVGDNSIDIP EANVIIQISS
601: HAGSRRQEAQ RLGRILRAKG KHQDRMAGGK EEYNAFFYSL VSTDTQEMYY STKRQQFLID QGYSFKVITS LPPSDSGSEL SYHRLDEQLQ LLGKVLSAGD
701: DAVGLEQLDE DADDVALQKA RRYVGSMSAM SGAKGMVYME YNSGKKGLIK NKPKDPTKRH QLFKKRFG

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.