CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41216	Soybean	nucleus	98.7	98.7
VIT_02s0025g00110.t01	Wine grape	cytosol	87.63	87.29
Solyc08g081340.2.1	Tomato	nucleus	86.07	86.07
PGSC0003DMT400032126	Potato	cytosol	81.64	85.77
AT5G41370.1	Thale cress	cytosol	85.03	85.14
CDY39742	Canola	cytosol	70.96	84.76
AT5G41360.1	Thale cress	cytosol	83.33	83.55
KRH46269	Soybean	extracellular, mitochondrion	8.98	83.13
Bra025503.1-P	Field mustard	cytosol	82.55	82.66
CDY58956	Canola	cytosol	82.42	82.53
KRH01148	Soybean	cytosol	12.11	82.3
Bra028496.1-P	Field mustard	cytosol	81.64	82.07
TraesCS3D01G261400.1	Wheat	cytosol	79.95	80.9
Os01t0691600-01	Rice	cytosol	61.07	80.86
TraesCS3A01G261300.1	Wheat	cytosol	80.21	80.63
CDY45389	Canola	nucleus	67.84	80.53
Zm00001d043797_P020	Maize	cytosol	80.34	80.44
TraesCS3B01G294400.1	Wheat	cytosol	79.95	80.26
EES01302	Sorghum	cytosol	79.95	80.05
HORVU3Hr1G064300.26	Barley	plastid	79.69	73.38

Protein Annotations

EntrezGene:100789550	MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	EMBL:ACUP02003345	InterPro:ERCC3_RAD25_C
EnsemblPlantsGene:GLYMA_05G209700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
UniProt:I1K6G2	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH59943	ProteinID:KRH59943	ProteinID:KRH59943.1
InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
TIGRFAMs:TIGR00603	UniParc:UPI000233985C	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:39162593..39170637

Molecular Weight (calculated)

86777.8 Da

IEP (calculated)

8.139

GRAVY (calculated)

-0.471

Length

768 amino acids

Sequence
(BLAST)

001: MGYGEKGGRP PFKKLKASTK FEDPQKGIAY DDDGYGGEDA YDDDDGKTKD FSKLELKPDH PNRPLWACGN GRIFLETFSP LYKHAYDFLI AIAEPVCRPE
101: SMHEYNLTPH SLYAAVSVGL ETETVISVLN KLSKTKLPKE MVKFIHDSTA NYGKVKLVLK KNRYFIESPF PEVLKTLLRD ETISRSRIIS ENVNGDGFTI
201: SKAAGEIEGT HDELLNEAEV AAVAEEKEAH SFEIDPSQVE NVKQRCLPNA LNYPMLEEYD FRNDTVNPDL DMELKPQAQP RPYQEKSLSK MFGNGRARSG
301: IIVLPCGAGK SLVGVSAACR IKKSCLCLAT NAVSVDQWAF QFKLWSTIRE EQICRFTSDS KERFRGNAGV VVTTYNMVAF GGKRSEESEK IIEEIRNREW
401: GLLLMDEVHV VPAHMFRKVI SITKSHCKLG LTATLVREDE RITDLNFLIG PKLYEANWLD LVKGGFIANV QCAEVWCPMT KEFFAEYLKK ENSKKRQALY
501: VMNPNKFRAC EFLINFHERT RGDKIIVFAD NLFALTEYAM KLRKPMIYGA TSHVERTKIL QAFKTSKDIN TIFLSKVGDN SIDIPEANVI IQISSHAGSR
601: RQEAQRLGRI LRAKGKLEDR MAGGKEEYNA FFYSLVSIDT QEMYYSTKRQ QFLIDQGYSF KVITSLPPPD EGPNLSYHRL EDQLALLGKV LSAGDDQVGL
701: EQLDEDADEI ALQSARRSQG SMSAMSGAKG MVYMEYSTGR NKGQGQIKSK PKDPAKRHFL FKRRYGAT

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.