Factsheet for PGSC0003DMT400032126

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081340.2.1	Tomato	nucleus	98.36	93.62
VIT_02s0025g00110.t01	Wine grape	cytosol	89.33	84.7
CDY39742	Canola	cytosol	73.19	83.2
KRH41216	Soybean	nucleus	85.77	81.64
KRH59943	Soybean	nucleus	85.77	81.64
AT5G41370.1	Thale cress	cytosol	85.64	81.62
AT5G41360.1	Thale cress	cytosol	83.99	80.16
Os01t0691600-01	Rice	cytosol	63.06	79.48
Bra025503.1-P	Field mustard	cytosol	83.17	79.27
CDY58956	Canola	cytosol	83.17	79.27
TraesCS3D01G261400.1	Wheat	cytosol	81.94	78.92
TraesCS3A01G261300.1	Wheat	cytosol	81.94	78.4
TraesCS3B01G294400.1	Wheat	cytosol	81.81	78.17
Bra028496.1-P	Field mustard	cytosol	81.53	78.01
Zm00001d043797_P020	Maize	cytosol	81.26	77.44
EES01302	Sorghum	cytosol	81.26	77.44
CDY45389	Canola	nucleus	66.76	75.42
PGSC0003DMT400068867	Potato	nucleus	73.32	73.63
KRH01148	Soybean	cytosol	11.22	72.57
HORVU3Hr1G064300.26	Barley	plastid	81.26	71.22
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	11.22	41.0

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M1AWX3
InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	EnsemblPlantsGene:PGSC0003DMG400012332	PGSC:PGSC0003DMG400012332
EnsemblPlants:PGSC0003DMT400032126	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI0002949133	InterPro:XPB/Ssl2
InterPro:XPB/Ssl2_N	SEG:seg	:	:	:	:

Description

Rad25/xp-B DNA repair helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400012332]

Coordinates

chr8:+:55039622..55049591

Molecular Weight (calculated)

82733.8 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.448

Length

731 amino acids

Sequence
(BLAST)

001: MGHHGHGDKS RPSKKIKFAS KEEYRASTAD DDQYYPEEGG DDFHDGEREG KKMDFTKLEL KPDHANRPLW ACADGRIFLE TFSPLYKQAY DFLIAIAEPV
101: CRPESMHEYN LTPHSLYAAV SVGLETETII AVLSKLSKTK LPKEMIDFIH ASTANYGKVL KRLLADDAIG KARISSEGMH GKDGFTVSKP VNEIEGGHDE
201: LINEVDVAAA AEEKETHSFE IDPAQVENVK QRCLPNALNY PMMEEYDFRN DTVNPDLDME LKPQAQPRPY QEKSLSKMFG NGRARSGIIV LPCGAGKSLV
301: GVSAASRIKK SCLCLATNAV SVDQWAFQFK LWSTIREEQI CRFTSDSKER FRGNVGVVVT TYNMVAFGGK RSEESEKIIE EIRNREWGLL LMDEVHVVPA
401: HMFRKVISIT KSHCKLGLTA TLVREDERIT DLNFLIGPKL YEANWLDLVK GGFIANVQCA EVWCPMTKEF FAEYLKKENS KKRQALYVMN PNKFRACEFL
501: IRFHEQQRGD KIIVFADNLF ALVEYAMKLR KPMIYGATSH VERTKILEAF KTSKEVNTIF LSKVGDNSID IPEANVIIQI SSHAGSRRQE AQRLGRILRA
601: KGKHQDRMAG GKEEYNAFFY SLVSTDTQEM YYSTKRQQFL IDQGYSFKVI TSLPPSDSGS ELSYHRLDDQ LQLLGKVLSA GDDAVGLEQL DEDADDVALQ
701: KARRYMGSMS AMSGAKGMVY MEYKYDYFSL H

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.