Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46269 | Soybean | extracellular, mitochondrion | 9.2 | 80.72 |
| PGSC0003DMT400032126 | Potato | cytosol | 73.63 | 73.32 |
Protein Annotations
| EntrezGene:102592877 | MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 | InterPro:ERCC3_RAD25_C | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006367 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0032508 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| UniProt:M1CJL7 | InterPro:P-loop_NTPase | PFAM:PF04851 | PFAM:PF13625 | PFAM:PF16203 | EnsemblPlantsGene:PGSC0003DMG400026783 |
| PGSC:PGSC0003DMG400026783 | EnsemblPlants:PGSC0003DMT400068867 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR11274 |
| PANTHER:PTHR11274:SF0 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00603 | UniParc:UPI0002966F98 |
| InterPro:XPB/Ssl2 | InterPro:XPB/Ssl2_N | RefSeq:XP_006363964.1 | SEG:seg | : | : |
Description
Rad25/xp-B DNA repair helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400026783]
Coordinates
chr10:-:31220109..31222295
Molecular Weight (calculated)
82706.8 Da
IEP (calculated)
6.829
GRAVY (calculated)
-0.437
Length
728 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVGEKGQPR KKIKPTITEV EVEDEDEDEF GGELMNDFTK LELKPDHENR PLWVCCDGRV FLETSSPIYH QASDFLIAIA EPVSRPNSIH EYNLTPHSLY
101: AAVSVSLQTH TIISVLNKLS KTNLPKEVVD FIQSSTSNYG KVKLVLKKNR YFIESPCPLV LKTLLKDDVI SRARIANTIE EEEAEYSFEI DPAQVESVKQ
201: RCLPNALNYP MLEEYDFRND TVNPDLDIEL KINAQPRPYQ VKSLSKMFGN GRARSGIIVL PCGAGKSLVG VSAATRINKS CLCLATNAVS VDQWAYQFRL
301: WSTIRDDQIC RFTTDSKEQF RGDAGVVVTT YNMVAFGGKR SEESEKLIEQ IRNREWGLLL LDEVHVVPAQ MFRKVISITK SHCKLGLTAT LVREDERITD
401: LNFLIGPKLY EANWSDLAKG GFIANVQCAE VWCPMTKEFF AEYLKQENHR KRKALYVMNP NKFRACEFLI RFHEQQRDDK IIVFSDNLFA LTEYSMRLRK
501: PMIYGCTSHA ERMKILEAFR TNPEVNTIFL SKVGDNSIDI PEANVIIQIS SHAGSRRQEA QRLGRILRAK RARLQGGSKT EEYDAFFYSL VSTDTQEMYY
601: STKRQQFLID QGYSFKVITN LPPPDSGPEL SYYHVGEQLE LLGRVLSAGD DIVGMEETEE EEEDSDGKVA SRENRTVGSM STYSGAKEII YMEYSGGQKK
701: PGAGGVVQTK SKPKDLSKRH VLFKKRYV
101: AAVSVSLQTH TIISVLNKLS KTNLPKEVVD FIQSSTSNYG KVKLVLKKNR YFIESPCPLV LKTLLKDDVI SRARIANTIE EEEAEYSFEI DPAQVESVKQ
201: RCLPNALNYP MLEEYDFRND TVNPDLDIEL KINAQPRPYQ VKSLSKMFGN GRARSGIIVL PCGAGKSLVG VSAATRINKS CLCLATNAVS VDQWAYQFRL
301: WSTIRDDQIC RFTTDSKEQF RGDAGVVVTT YNMVAFGGKR SEESEKLIEQ IRNREWGLLL LDEVHVVPAQ MFRKVISITK SHCKLGLTAT LVREDERITD
401: LNFLIGPKLY EANWSDLAKG GFIANVQCAE VWCPMTKEFF AEYLKQENHR KRKALYVMNP NKFRACEFLI RFHEQQRDDK IIVFSDNLFA LTEYSMRLRK
501: PMIYGCTSHA ERMKILEAFR TNPEVNTIFL SKVGDNSIDI PEANVIIQIS SHAGSRRQEA QRLGRILRAK RARLQGGSKT EEYDAFFYSL VSTDTQEMYY
601: STKRQQFLID QGYSFKVITN LPPPDSGPEL SYYHVGEQLE LLGRVLSAGD DIVGMEETEE EEEDSDGKVA SRENRTVGSM STYSGAKEII YMEYSGGQKK
701: PGAGGVVQTK SKPKDLSKRH VLFKKRYV
001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
Arabidopsis Description
XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.