Factsheet for Bra025503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39742	Canola	cytosol	83.7	99.84
CDY58956	Canola	cytosol	99.61	99.61
Bra028496.1-P	Field mustard	cytosol	94.52	94.9
AT5G41370.1	Thale cress	cytosol	93.09	93.09
AT5G41360.1	Thale cress	cytosol	91.66	91.78
VIT_02s0025g00110.t01	Wine grape	cytosol	84.62	84.18
Solyc08g081340.2.1	Tomato	nucleus	84.09	83.98
PGSC0003DMT400032126	Potato	cytosol	79.27	83.17
KRH59943	Soybean	nucleus	82.66	82.55
KRH41216	Soybean	nucleus	82.53	82.42
TraesCS3D01G261400.1	Wheat	cytosol	80.57	81.42
TraesCS3A01G261300.1	Wheat	cytosol	80.83	81.15
TraesCS3B01G294400.1	Wheat	cytosol	80.57	80.78
Os01t0691600-01	Rice	cytosol	61.02	80.69
Zm00001d043797_P020	Maize	cytosol	79.79	79.79
EES01302	Sorghum	cytosol	79.53	79.53
KRH01148	Soybean	cytosol	11.08	75.22
HORVU3Hr1G064300.26	Barley	plastid	80.05	73.62
GSMUA_Achr2P04330_001	Banana	nucleus, plastid	11.86	45.5

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra025503	EnsemblPlants:Bra025503.1	EnsemblPlants:Bra025503.1-P
InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004003	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006367	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4E9P7	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625
PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI000254529D	InterPro:XPB/Ssl2
InterPro:XPB/Ssl2_N	SEG:seg	:	:	:	:

Description

AT5G41370 (E=0.0) XPB1, ATXPB1 | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding

Coordinates

chrA04:+:8293323..8297811

Molecular Weight (calculated)

86658.6 Da

IEP (calculated)

8.301

GRAVY (calculated)

-0.499

Length

767 amino acids

Sequence
(BLAST)

001: MGNGERGRSS KKMKYGGKDD HKMKNTQNEE YYLGDDADED SRDGEGEKMN TDFSKLELKP DHGNRPLWAC ADGRIFLETF SPLYKQAYDF LIAIAEPVCR
101: PESMHEYNLT PHSLYAAVSV GLETETIISV LNKLSKTKLP KDMIDFINAS TANYGKVKLV LKKNRYFIES PFPEVLKKLG NDVVISKARF YEPYGGDGFT
201: VGKTSGELEA GHGELLNAAE LAAAAEEKET HSFEIDPALV ETVKQRCLPS ELNYPMLEEY DFRNDNVNPD LDMELKPHAQ PRPYQEKSLS KMFGNGRARS
301: GIIVLPCGAG KSLVGVSAAA RIKKSCLCLA TNAVSVDQWA FQFKLWSTIR DDQICRFTSD SKERFRGNAG VVVTTYNMVA FGGKRSEESE KIIEEMRNRE
401: WGLLLMDEVH VVPAQMFRKV ISITKSHCKL GLTATLVRED EKITDLNFLI GPKLYEANWL DLVKGGFIAN VQCAEVWCPM TKEFFAEYLK KENSKKKQAL
501: YVMNPNKFRA CEFLIRFHEQ QRGDKIIVFA DNLFALTEYA MKLRKPMIYG ATSHIERTKI LEAFKTSKDV NTVFLSKVGD NSIDIPEANV IIQISSHAGS
601: RRQEAQRLGR ILRAKGKIED RMAGGKEEYN AFFYSLVSTD TQEMYYSTKR QQFLIDQGYS FKVITSLPPA DAGSSLSYHS QEEQLSLLAK VLNAGDDLVG
701: LEQLEEDTDG MALQAARRRK GLMSEMSGAK GFVYQEFNSG RHKSSGQQSR KPKDPTKRHQ LFKKRFV

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.