Factsheet for Os01t0691600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39742	Canola	cytosol	80.69	72.78
EES01302	Sorghum	cytosol	93.1	70.4
Zm00001d043797_P020	Maize	cytosol	92.93	70.27
TraesCS3A01G261300.1	Wheat	cytosol	92.41	70.16
TraesCS3B01G294400.1	Wheat	cytosol	92.41	70.07
TraesCS3D01G261400.1	Wheat	cytosol	91.03	69.57
GSMUA_AchrUn_...	Banana	cytosol	86.03	65.31
VIT_02s0025g00110.t01	Wine grape	cytosol	84.31	63.42
HORVU3Hr1G064300.26	Barley	plastid	90.69	63.07
PGSC0003DMT400032126	Potato	cytosol	79.48	63.06
AT5G41370.1	Thale cress	cytosol	82.76	62.58
Solyc08g081340.2.1	Tomato	nucleus	82.41	62.24
AT5G41360.1	Thale cress	cytosol	82.07	62.14
KRH41216	Soybean	nucleus	80.86	61.07
KRH59943	Soybean	nucleus	80.86	61.07
Bra025503.1-P	Field mustard	cytosol	80.69	61.02
CDY58956	Canola	cytosol	80.34	60.76
Bra028496.1-P	Field mustard	cytosol	79.66	60.47
KRH01148	Soybean	cytosol	11.38	58.41
CDY45389	Canola	nucleus	61.9	55.49

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	ProteinID:BAF05850.1	ProteinID:BAS73809.1	InterPro:ERCC3_RAD25_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd	InterPro:IPR014001	EnsemblPlantsGene:Os01g0691600
EnsemblPlants:Os01t0691600-01	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625	PFAM:PF16203	PRINTS:PR00851
PFscan:PS51192	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0	UniProt:Q0JK78	SMART:SM00487	SUPFAM:SSF52540
TIGRFAMs:TIGR00603	UniParc:UPI0000DD8C98	InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	SEG:seg	:

Description

Xeroderma pigmentosum (XP) complementation group of protein B2Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2). (Os01t0691600-01);Similar to XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP-dependent helicase. (Os01t0691600-02)

Coordinates

chr1:+:28545585..28553746

Molecular Weight (calculated)

65744.0 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.362

Length

580 amino acids

Sequence
(BLAST)

001: MAGGDGDRAR APKRHKSSAP SRSIDETAEL DYTDDVDDDV RDADREVKKR DFTKLELKPD HANRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETSTIISVM SKLSKTKLPR EIIDFIHAST ANYGKVKLVL KKNRYFVESP FPEVLKTLLK DDIICRARIS PEDSVGAPSF
201: TISKTAGEMA SGHEDLLDGM ELAAATEDKE THSFEIDPSQ VENVKQRCLP NALNFPMLEE YDFRNDTVNP DLEMELKPQA RPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA CRIKKSCLCL ATNAVSVDQW AFQFKLWSTI KDEHISRFTS DNKEKFRGMA GVVVTTYNMV AFGGKRSEDS EKIIEEIRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQV
501: LYAMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTSY AMKLRKPMIY GSTSHVERTR ILHQFKNSSD VNTIFLSKVQ

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.