Factsheet for TraesCS3D01G261400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G261300.1	Wheat	cytosol	99.08	98.43
TraesCS3B01G294400.1	Wheat	cytosol	98.95	98.17
EES01302	Sorghum	cytosol	93.02	92.05
Zm00001d043797_P020	Maize	cytosol	92.49	91.53
Os01t0691600-01	Rice	cytosol	69.57	91.03
HORVU3Hr1G064300.26	Barley	plastid	97.5	88.73
GSMUA_AchrUn_...	Banana	cytosol	85.11	84.56
CDY39742	Canola	cytosol	70.62	83.36
VIT_02s0025g00110.t01	Wine grape	cytosol	84.06	82.75
AT5G41370.1	Thale cress	cytosol	83.4	82.53
PGSC0003DMT400032126	Potato	cytosol	78.92	81.94
Solyc08g081340.2.1	Tomato	nucleus	82.87	81.9
AT5G41360.1	Thale cress	cytosol	82.35	81.59
Bra025503.1-P	Field mustard	cytosol	81.42	80.57
CDY58956	Canola	cytosol	81.16	80.31
KRH41216	Soybean	nucleus	81.03	80.08
KRH59943	Soybean	nucleus	80.9	79.95
Bra028496.1-P	Field mustard	cytosol	79.97	79.45
CDY45389	Canola	nucleus	65.74	77.13
KRH01148	Soybean	cytosol	10.14	68.14

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	InterPro:ERCC3_RAD25_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625
PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	EnsemblPlantsGene:TraesCS3D01G261400	EnsemblPlants:TraesCS3D01G261400.1
InterPro:XPB/Ssl2	InterPro:XPB/Ssl2_N	TIGR:cd00046	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:363325337..363332858

Molecular Weight (calculated)

85542.6 Da

IEP (calculated)

8.268

GRAVY (calculated)

-0.406

Length

759 amino acids

Sequence
(BLAST)

001: MAGGDGDRAR APKRYKSSAP SKAALVDETA EMNYADDFDD DARDGDNEVK KRDFTKLELK LDHVNRPLWA CADGRIFLET FSPLYKQAYD FLIAIAEPVC
101: RPESMHEYNL TPHSLYAAVS VGLETTTIIS VLSKLSKTKL PHEIIDFIHG STANYGKVKL VLKKNQYFVE SPFPEVLKTL LNDDVISKAR KAPEDCLAVS
201: RTAGEIASGH DLLDEMQLAA ATEEKETHSF EIDSAQVENV KQRCLPNALN FPMLEEYDFR NDTVNPDLDM ELKPQARPRP YQEKSLSKMF GNGRARSGII
301: VLPCGAGKSL VGVSAACRIK KSCLCLATNA VSVDQWAFQF KLWSTIRDEH ISRFTSDNKE KFRGMAGVVV TTYNMVAFGG KRSEDSEKII EEIRNREWGL
401: LLMDEVHVVP AHMFRKVISI TKSHCKLGLT ATLVREDERI TDLNFLIGPK LYEANWLDLV KGGFIANVQC AEVWCPMTKE FFAEYLKKEN SKKKQVLYVM
501: NPNKFRACEF LIRFHEQQRG DKIIVFADNL FALTAYAMKL RKPMIYGATS HAERTRILYQ FKNSPEVNTV FLSKVGDNSI DIPEANVIIQ ISSHAGSRRQ
601: EAQRLGRILR AKGKHQDRMA GGKEEYNAFF YSLVSTDTQE MYYSTKRQQF LIDQGYSFKV ITSLPPPEEG PNLSFHTLDE QLDLLGKVLS AGDDMIGVEH
701: LEEDSDGKAL LKARRSAGLM SAFSGAGGMV YMEYNTGKGK GAKKKDPAKR HTLFKKRYT

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.