Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025503.1-P | Field mustard | cytosol | 99.61 | 99.61 |
| CDY39742 | Canola | cytosol | 83.31 | 99.38 |
| CDY45389 | Canola | nucleus | 78.62 | 93.2 |
| AT5G41370.1 | Thale cress | cytosol | 92.96 | 92.96 |
| AT5G41360.1 | Thale cress | cytosol | 91.53 | 91.64 |
| VIT_02s0025g00110.t01 | Wine grape | cytosol | 84.35 | 83.92 |
| Solyc08g081340.2.1 | Tomato | nucleus | 83.96 | 83.85 |
| PGSC0003DMT400032126 | Potato | cytosol | 79.27 | 83.17 |
| KRH59943 | Soybean | nucleus | 82.53 | 82.42 |
| KRH41216 | Soybean | nucleus | 82.4 | 82.29 |
| TraesCS3D01G261400.1 | Wheat | cytosol | 80.31 | 81.16 |
| TraesCS3A01G261300.1 | Wheat | cytosol | 80.57 | 80.89 |
| TraesCS3B01G294400.1 | Wheat | cytosol | 80.31 | 80.52 |
| Os01t0691600-01 | Rice | cytosol | 60.76 | 80.34 |
| Zm00001d043797_P020 | Maize | cytosol | 79.53 | 79.53 |
| EES01302 | Sorghum | cytosol | 79.27 | 79.27 |
| KRH01148 | Soybean | cytosol | 11.08 | 75.22 |
| HORVU3Hr1G064300.26 | Barley | plastid | 79.79 | 73.38 |
| GSMUA_Achr2P04330_001 | Banana | nucleus, plastid | 11.73 | 45.0 |
Protein Annotations
| MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 | GO:A0A078J769 | UniProt:A0A078J769 | EnsemblPlants:CDY58956 |
| ProteinID:CDY58956 | ProteinID:CDY58956.1 | InterPro:ERCC3_RAD25_C | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006367 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | EnsemblPlantsGene:GSBRNA2T00025355001 |
| InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
| PFAM:PF04851 | PFAM:PF13625 | PFAM:PF16203 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00603 |
| UniParc:UPI0004EDB08A | InterPro:XPB/Ssl2 | InterPro:XPB/Ssl2_N | SEG:seg | : | : |
Description
BnaCnng34010DBnaCnng34010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J769]
Coordinates
chrLK033714:+:26467..31349
Molecular Weight (calculated)
86649.6 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.499
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGERGRSS KKMKYGGKDD QKMKNTQNEE YYLGDDADED SREGEGEKMN TDFSKLELKP DHGNRPLWAC ADGRIFLETF SPLYKQAYDF LIAIAEPVCR
101: PESMHEYNLT PHSLYAAVSV GLETETIISV LNKLSKTKLP KDMIDFINAS TANYGKVKLV LKKNRYFIES PFPDVLKKLG NDVVISKARF YEPYGGDGFT
201: VGKTSGELEA GHGELLNAAE LAAAAEEKET HSFEIDPALV ETVKQRCLPS ELNYPMLEEY DFRNDNVNPD LDMELKPHAQ PRPYQEKSLS KMFGNGRARS
301: GIIVLPCGAG KSLVGVSAAA RIKKSCLCLA TNAVSVDQWA FQFKLWSTIR DDQICRFTSD SKERFRGNAG VVVTTYNMVA FGGKRSEESE KIIEEMRNRE
401: WGLLLMDEVH VVPAQMFRKV ISITKSHCKL GLTATLVRED EKITDLNFLI GPKLYEANWL DLVKGGFIAN VQCAEVWCPM TKEFFAEYLK KENSKKKQAL
501: YVMNPNKFRA CEFLIRFHEQ QRGDKIIVFA DNLFALTEYA MKLRKPMIYG ATSHIERTKI LEAFKTSKDV NTVFLSKVGD NSIDIPEANV IIQISSHAGS
601: RRQEAQRLGR ILRAKGKIED RMAGGKEEYN AFFYSLVSTD TQEMYYSTKR QQFLIDQGYS FKVITSLPPA DAGSSLSYHS QEEQLSLLAK VLNAGDDLVG
701: LEQLEEDTDG MALQAARRRK GLMSEMSGAK GFVYQEFNSG RHKSSGQQSR KPKDPTKRHQ LFKKRFV
101: PESMHEYNLT PHSLYAAVSV GLETETIISV LNKLSKTKLP KDMIDFINAS TANYGKVKLV LKKNRYFIES PFPDVLKKLG NDVVISKARF YEPYGGDGFT
201: VGKTSGELEA GHGELLNAAE LAAAAEEKET HSFEIDPALV ETVKQRCLPS ELNYPMLEEY DFRNDNVNPD LDMELKPHAQ PRPYQEKSLS KMFGNGRARS
301: GIIVLPCGAG KSLVGVSAAA RIKKSCLCLA TNAVSVDQWA FQFKLWSTIR DDQICRFTSD SKERFRGNAG VVVTTYNMVA FGGKRSEESE KIIEEMRNRE
401: WGLLLMDEVH VVPAQMFRKV ISITKSHCKL GLTATLVRED EKITDLNFLI GPKLYEANWL DLVKGGFIAN VQCAEVWCPM TKEFFAEYLK KENSKKKQAL
501: YVMNPNKFRA CEFLIRFHEQ QRGDKIIVFA DNLFALTEYA MKLRKPMIYG ATSHIERTKI LEAFKTSKDV NTVFLSKVGD NSIDIPEANV IIQISSHAGS
601: RRQEAQRLGR ILRAKGKIED RMAGGKEEYN AFFYSLVSTD TQEMYYSTKR QQFLIDQGYS FKVITSLPPA DAGSSLSYHS QEEQLSLLAK VLNAGDDLVG
701: LEQLEEDTDG MALQAARRRK GLMSEMSGAK GFVYQEFNSG RHKSSGQQSR KPKDPTKRHQ LFKKRFV
001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
Arabidopsis Description
XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.