Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39742 | Canola | cytosol | 45.5 | 14.15 |
| CDY45389 | Canola | nucleus | 44.0 | 13.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.5 | 13.22 |
| VIT_02s0025g00110.t01 | Wine grape | cytosol | 48.5 | 12.58 |
| Solyc08g081340.2.1 | Tomato | nucleus | 47.5 | 12.37 |
| AT5G41370.1 | Thale cress | cytosol | 47.0 | 12.26 |
| AT5G41360.1 | Thale cress | cytosol | 46.5 | 12.14 |
| Bra025503.1-P | Field mustard | cytosol | 45.5 | 11.86 |
| Bra028496.1-P | Field mustard | cytosol | 45.0 | 11.78 |
| CDY58956 | Canola | cytosol | 45.0 | 11.73 |
| PGSC0003DMT400032126 | Potato | cytosol | 41.0 | 11.22 |
| KRH01148 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P04330_001 | EnsemblPlants:GSMUA_Achr2T04330_001 | EnsemblPlantsGene:GSMUA_Achr2G04330_001 | PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 | UniParc:UPI00029639AD |
| UniProt:M0S524 | MapMan:35.1 | : | : | : | : |
Description
Putative DNA repair helicase XPB1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04330_001]
Coordinates
chr2:+:9751787..9754170
Molecular Weight (calculated)
22423.3 Da
IEP (calculated)
7.852
GRAVY (calculated)
0.067
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVSFCKPSS LSTSEPTVTS LPSQSLSAGI VVSHEYNLTP HTLCAAVSVG LKIETIISVP SKLLENEVAT WGNWLFVHQS TANYGKVKLV LKKTWNFVEP
101: PFPEVLKQLL KVMSYQRHGL TLRTILMMLI HSQLANLTFP AAIENLMPQY LNSQVENVKQ HCLLNGLNYP ILQRYDFCND TANPDLNIEL KPQAWACCHI
101: PFPEVLKQLL KVMSYQRHGL TLRTILMMLI HSQLANLTFP AAIENLMPQY LNSQVENVKQ HCLLNGLNYP ILQRYDFCND TANPDLNIEL KPQAWACCHI
001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
Arabidopsis Description
XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.