Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0691600-01 | Rice | cytosol | 65.31 | 86.03 |
| TraesCS3D01G261400.1 | Wheat | cytosol | 84.56 | 85.11 |
| TraesCS3A01G261300.1 | Wheat | cytosol | 85.08 | 85.08 |
| EES01302 | Sorghum | cytosol | 85.21 | 84.88 |
| Zm00001d043797_P020 | Maize | cytosol | 85.21 | 84.88 |
| TraesCS3B01G294400.1 | Wheat | cytosol | 84.82 | 84.71 |
| HORVU3Hr1G064300.26 | Barley | plastid | 84.16 | 77.1 |
| GSMUA_Achr2P04330_001 | Banana | nucleus, plastid | 13.22 | 50.5 |
Protein Annotations
| MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 | InterPro:ERCC3_RAD25_C | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006367 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG06820_001 | EnsemblPlants:GSMUA_AchrUn_randomP06820_001 | EnsemblPlants:GSMUA_AchrUn_randomT06820_001 | InterPro:Helicase/UvrB_N | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0U6Z3 | InterPro:P-loop_NTPase | PFAM:PF04851 | PFAM:PF13625 |
| PFAM:PF16203 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00603 | UniParc:UPI0002965D41 | InterPro:XPB/Ssl2 |
| InterPro:XPB/Ssl2_N | SEG:seg | : | : | : | : |
Description
DNA repair helicase XPB2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06820_001]
Coordinates
chrchrUn_random:+:29431972..29443153
Molecular Weight (calculated)
86349.2 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.433
Length
764 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKHKTSSSS YSKAVHMMEE EDFNDYGNDF DDDSRDGESE IKKRDFTQLE LKPDHVNRPL WACADGRIFL ETFSPLYKQA YDFLIAIAEP VCRPESMHEY
101: NLTPHSLYAA VSVGLETETI ISVLSKLSKT KLPAEIIDFI HGSTANYGKV KLVLKKNRYF VESPFPEVLK RLLKDDVISK ARINSEDLHG AETFTISKSV
201: REIQGGHEDL LNGADLAAAA EEKETHSFEI DPAQVENVKQ RCLPNALNYP MLEEYDFRND TVNPDLNIEL KPQAQPRPYQ EKSLSKMFGN GRARSGIIVL
301: PCGAGKSLVG VSAACRVKKS CLCLATNAVS VDQWAFQFKL WSTIKDEQIS RFTSDNKEKF RSLAGVVVTT YNMVAFGGKR SEDSEKIIEE IRNREWGLLL
401: MDEVHVVPAH MFRKVISITK SHCKLGLTAT LVREDERITD LNFLIGPKLY EANWLDLVKG GFIANVQCAE VWCPMTKEFF AEYLKKENSK KKQALYVMNP
501: NKFRACEFLI RFHEQQRGDK IIVFADNLFA LTAYAMKLRK PMIYGATSHN ERTRILEAFK NSPDVNTIFL SKVGDNSIDI PEANVIIQIS SHAGSRRQEA
601: QRLGRILRAK GRLQDRMAGG KEEYNAFFYS LVSTDTQEMY YSTKRQQFLI DQGYSFKVIT SLPPPDSGAE LSYHSLEEQI ELLSKVLNAG DDMVGLEQLQ
701: EDADDIANIK SKRSAGSMSA FSGATGMVYM EYSTGKSKQA GHGLKSKPKD PSKRHVLFKK RFAP
101: NLTPHSLYAA VSVGLETETI ISVLSKLSKT KLPAEIIDFI HGSTANYGKV KLVLKKNRYF VESPFPEVLK RLLKDDVISK ARINSEDLHG AETFTISKSV
201: REIQGGHEDL LNGADLAAAA EEKETHSFEI DPAQVENVKQ RCLPNALNYP MLEEYDFRND TVNPDLNIEL KPQAQPRPYQ EKSLSKMFGN GRARSGIIVL
301: PCGAGKSLVG VSAACRVKKS CLCLATNAVS VDQWAFQFKL WSTIKDEQIS RFTSDNKEKF RSLAGVVVTT YNMVAFGGKR SEDSEKIIEE IRNREWGLLL
401: MDEVHVVPAH MFRKVISITK SHCKLGLTAT LVREDERITD LNFLIGPKLY EANWLDLVKG GFIANVQCAE VWCPMTKEFF AEYLKKENSK KKQALYVMNP
501: NKFRACEFLI RFHEQQRGDK IIVFADNLFA LTAYAMKLRK PMIYGATSHN ERTRILEAFK NSPDVNTIFL SKVGDNSIDI PEANVIIQIS SHAGSRRQEA
601: QRLGRILRAK GRLQDRMAGG KEEYNAFFYS LVSTDTQEMY YSTKRQQFLI DQGYSFKVIT SLPPPDSGAE LSYHSLEEQI ELLSKVLNAG DDMVGLEQLQ
701: EDADDIANIK SKRSAGSMSA FSGATGMVYM EYSTGKSKQA GHGLKSKPKD PSKRHVLFKK RFAP
001: MGNDERKRPT KKMKYGGKDD QKMKNIQNVE DYYDDADEDS RDGEGEEKRR DFTDLELKPD HGNRPLWACA DGKIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPG EIIDFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFT SEPYYGGDGF
201: TIGKTSGELE AGPGELLNEA ELAAAAEEKE THSFEIDPAL VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AYQFKLWSTI KDDQICRFTS DSKERFRGNA GVVVTTYNMI AFGGKRSEEA EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DEKITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKT VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLGYH SQEEQLSLLG KVLNAGDDMV
701: GLEQLEEDTD GKALKTRRSM GSMSAMSGAN GRVYMEYNSG RQKSGNQSKK PKDPTKRHNI FKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPG EIIDFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFT SEPYYGGDGF
201: TIGKTSGELE AGPGELLNEA ELAAAAEEKE THSFEIDPAL VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AYQFKLWSTI KDDQICRFTS DSKERFRGNA GVVVTTYNMI AFGGKRSEEA EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DEKITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKT VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLGYH SQEEQLSLLG KVLNAGDDMV
701: GLEQLEEDTD GKALKTRRSM GSMSAMSGAN GRVYMEYNSG RQKSGNQSKK PKDPTKRHNI FKKRYV
Arabidopsis Description
XPB2XPB2 [Source:UniProtKB/TrEMBL;Acc:A0A178UFA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.