Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01302 | Sorghum | cytosol | 97.91 | 97.91 |
| Os01t0691600-01 | Rice | cytosol | 70.27 | 92.93 |
| TraesCS3A01G261300.1 | Wheat | cytosol | 92.44 | 92.8 |
| TraesCS3B01G294400.1 | Wheat | cytosol | 92.31 | 92.55 |
| TraesCS3D01G261400.1 | Wheat | cytosol | 91.53 | 92.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 84.88 | 85.21 |
| HORVU3Hr1G064300.26 | Barley | plastid | 91.0 | 83.69 |
| VIT_02s0025g00110.t01 | Wine grape | cytosol | 83.57 | 83.14 |
| CDY39742 | Canola | cytosol | 69.23 | 82.58 |
| AT5G41370.1 | Thale cress | cytosol | 81.36 | 81.36 |
| PGSC0003DMT400032126 | Potato | cytosol | 77.44 | 81.26 |
| Solyc08g081340.2.1 | Tomato | nucleus | 81.36 | 81.25 |
| AT5G41360.1 | Thale cress | cytosol | 80.7 | 80.81 |
| KRH41216 | Soybean | nucleus | 80.57 | 80.47 |
| KRH59943 | Soybean | nucleus | 80.44 | 80.34 |
| Bra025503.1-P | Field mustard | cytosol | 79.79 | 79.79 |
| CDY58956 | Canola | cytosol | 79.53 | 79.53 |
| Bra028496.1-P | Field mustard | cytosol | 78.36 | 78.66 |
| CDY45389 | Canola | nucleus | 64.54 | 76.51 |
| KRH01148 | Soybean | cytosol | 10.04 | 68.14 |
Protein Annotations
| EntrezGene:100274310 | EntrezGene:100381456 | EntrezGene:103651319 | MapMan:14.6.3.2.3 | MapMan:15.3.5.6.1.3 | Gene3D:3.40.50.300 |
| UniProt:A0A1D6NF15 | InterPro:ERCC3_RAD25_C | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0004003 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006367 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | InterPro:Helicase/UvrB_N |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | ProteinID:ONM39064.1 | InterPro:P-loop_NTPase |
| PFAM:PF04851 | PFAM:PF13625 | PFAM:PF16203 | PRINTS:PR00851 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR11274 | PANTHER:PTHR11274:SF0 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00603 |
| UniParc:UPI00022118D2 | InterPro:XPB/Ssl2 | InterPro:XPB/Ssl2_N | EnsemblPlantsGene:Zm00001d043797 | EnsemblPlants:Zm00001d043797_P020 | EnsemblPlants:Zm00001d043797_T020 |
| SEG:seg | : | : | : | : | : |
Description
DNA repair helicase XPB1
Coordinates
chr3:-:210384643..210393043
Molecular Weight (calculated)
86444.3 Da
IEP (calculated)
8.193
GRAVY (calculated)
-0.418
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGDGDRHR APKRHKSSTP SKAALVDESA EFDYADDFDD DAHDADTEVK KRDFTKLELK VDHASRPLWA CADGRIFLET FSPLYKQAYD FLIAIAEPVC
101: RPESMHEYNL TPHSLYAAVS VGLETSTIIS VLSKLSKTKL PREIIDFIHG STANYGKVKL VLKKNRYFVE SPFPEVLSTL LRDEVISRAR ISPEDSLGAP
201: SFTVSKTSGQ IASGHEDLLN GMEIAAATED KETHSFEIDP SQVENVKQRC LPNALNYPML EEYDFRNDTV NPDLDMELKP QARPRPYQEK SLSKMFGNGR
301: ARSGIIVLPC GAGKSLVGVS AACRIKKSCL CLATNAVSVD QWAFQFKLWS TIKDENISRF TSDNKEKFTG MAGVVVTTYN MVAFGGKRSE DSEKIIEEIR
401: NREWGLLLMD EVHVVPAHMF RKVISITKSH CKLGLTATLV REDERITDLN FLIGPKLYEA NWLDLVKGGF IANVQCAEVW CPMTKEFFAE YLKKENSKKK
501: QVLYVMNPNK FRACEFLIRF HEQQRGDKII VFADNLFALT TYAMKLRKPM IFGATSHAER TRILYQFKNS PEVNTIFLSK VGDNSIDIPE ANVIIQISSH
601: AGSRRQEAQR LGRILRAKGK HQDRMAGGKE EYNAFFYSLV STDTQEMYYS TKRQQFLIDQ GYSFKVITSL PPAEEGPNLS YYTLDEQLEL LSMALNAGDD
701: MIGVERLEED SDGKALIRAR RSAGSMSAFS GAGGMVYMEY STGKGKGVQK KHKDPSKRHH LFKKRYA
101: RPESMHEYNL TPHSLYAAVS VGLETSTIIS VLSKLSKTKL PREIIDFIHG STANYGKVKL VLKKNRYFVE SPFPEVLSTL LRDEVISRAR ISPEDSLGAP
201: SFTVSKTSGQ IASGHEDLLN GMEIAAATED KETHSFEIDP SQVENVKQRC LPNALNYPML EEYDFRNDTV NPDLDMELKP QARPRPYQEK SLSKMFGNGR
301: ARSGIIVLPC GAGKSLVGVS AACRIKKSCL CLATNAVSVD QWAFQFKLWS TIKDENISRF TSDNKEKFTG MAGVVVTTYN MVAFGGKRSE DSEKIIEEIR
401: NREWGLLLMD EVHVVPAHMF RKVISITKSH CKLGLTATLV REDERITDLN FLIGPKLYEA NWLDLVKGGF IANVQCAEVW CPMTKEFFAE YLKKENSKKK
501: QVLYVMNPNK FRACEFLIRF HEQQRGDKII VFADNLFALT TYAMKLRKPM IFGATSHAER TRILYQFKNS PEVNTIFLSK VGDNSIDIPE ANVIIQISSH
601: AGSRRQEAQR LGRILRAKGK HQDRMAGGKE EYNAFFYSLV STDTQEMYYS TKRQQFLIDQ GYSFKVITSL PPAEEGPNLS YYTLDEQLEL LSMALNAGDD
701: MIGVERLEED SDGKALIRAR RSAGSMSAFS GAGGMVYMEY STGKGKGVQK KHKDPSKRHH LFKKRYA
001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV
Arabidopsis Description
XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.