Factsheet for HORVU3Hr1G064300.26

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G261300.1	Wheat	cytosol	89.69	97.91
TraesCS3B01G294400.1	Wheat	cytosol	89.45	97.52
TraesCS3D01G261400.1	Wheat	cytosol	88.73	97.5
EES01302	Sorghum	cytosol	84.29	91.66
Zm00001d043797_P020	Maize	cytosol	83.69	91.0
Os01t0691600-01	Rice	cytosol	63.07	90.69
GSMUA_AchrUn_...	Banana	cytosol	77.1	84.16
CDY39742	Canola	cytosol	63.91	82.89
AT5G41370.1	Thale cress	cytosol	75.18	81.75
VIT_02s0025g00110.t01	Wine grape	cytosol	75.54	81.71
PGSC0003DMT400032126	Potato	cytosol	71.22	81.26
Solyc08g081340.2.1	Tomato	nucleus	74.7	81.12
AT5G41360.1	Thale cress	cytosol	74.22	80.81
Bra025503.1-P	Field mustard	cytosol	73.62	80.05
KRH41216	Soybean	nucleus	73.62	79.95
CDY58956	Canola	cytosol	73.38	79.79
KRH59943	Soybean	nucleus	73.38	79.69
Bra028496.1-P	Field mustard	cytosol	72.3	78.93
CDY45389	Canola	nucleus	59.35	76.51
KRH01148	Soybean	cytosol	9.23	68.14

Protein Annotations

MapMan:14.6.3.2.3	MapMan:15.3.5.6.1.3	Gene3D:3.40.50.300	UniProt:A0A287LCL5	ncoils:Coil	InterPro:ERCC3_RAD25_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006367
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	EnsemblPlantsGene:HORVU3Hr1G064300	EnsemblPlants:HORVU3Hr1G064300.26	InterPro:Helicase/UvrB_N	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF04851	PFAM:PF13625
PFAM:PF16203	PRINTS:PR00851	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR11274	PANTHER:PTHR11274:SF0
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00603	UniParc:UPI000B474933	InterPro:XPB/Ssl2
InterPro:XPB/Ssl2_N	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:490796866..490805707

Molecular Weight (calculated)

94135.6 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.360

Length

834 amino acids

Sequence
(BLAST)

001: PHPYVFLAQH PSSTFSIFLD STRLDSTRFV RAPTYTASSL PAMAGGDGDR ARAPKRYKSS APSKAALVDE TAEMNYADDF DDDARDGDNE VKKRDFTKLE
101: LKPDHVNRPL WACADGRIFL ETFSPLYKQA YDFLIAIAEP VCRPESMHEY NLTPHSLYAA VSVGLETNTI ISVLSKLSKT KLPHEIIEFI HGSTANYGKV
201: KLVLKKNQYF VESPFPEVVS FFLQLYNFDY SVTRYLLIYL SCDVCVQVLE KLLNDDVISK ARKAPEDCLG GSAFAVSKAA REIASGHDLL DGTELADANE
301: DKETHSFEVY SSQVENVKQR CLPNALNFPM LEEYDFRNDT VNPDLDMELK PQARPRPYQE KSLSKMFGNG RARSGIIVLP CGAGKSLVGV SAACRIKKSC
401: LCLATNAVSV DQWAFQFKLW STIRDEHISR FTSDNKEKFR GMAGVVVTTY NMVAFGGKRS EDSEKIIEEI RNREWGLLLM DEVHVVPAHM FRKVISITKS
501: HCKLGLTATL VREDERITDL NFLIGPKLYE ANWLDLVKGG FIANVQCAEV WCPMTKEFFA EYLKKENSKK KQVLYVMNPN KFRACEFLIR FHEQQRGDKI
601: IVFADNLFAL TAYAMKLRKP MIYGATSHAE RTRILYQFKN SPEVNTVFLS KVGDNSIDIP EANVIIQISS HAGSRRQEAQ RLGRILRAKG KHQDRMAGGK
701: EEYNAFFYSL VSTDTQEMYY STKRQQFLID QGYSFKVITS LPPPEEGPNL SFHTLDEQLD LLGKVLSAGD DMIGVEHLEE DSDGKALLKA RRSAGLMSAF
801: SGAGGMVYME YNKGKGAKKK DPAKRHTLFK KRYT

Best Arabidopsis Sequence Match ( AT5G41370.1 )
(BLAST)

001: MGNGERGRPN KKMKYGGKDD QKMKNIQNAE DYYDDADEDS RDGEGEEKKR DFTKLELKPD HGNRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
101: ESMHEYNLTP HSLYAAVSVG LETETIISVL NKLSKTKLPK EMIEFIHAST ANYGKVKLVL KKNRYFIESP FPEVLKRLLS DDVINRARFS SEPYYGGDGF
201: SVGRTCGELE AGPGELLNEA EFAAAAEEKE THSFEIDPAQ VENVKQRCLP NALNYPMLEE YDFRNDNVNP DLDMELKPHA QPRPYQEKSL SKMFGNGRAR
301: SGIIVLPCGA GKSLVGVSAA ARIKKSCLCL ATNAVSVDQW AFQFKLWSTI RDDQICRFTS DSKERFRGNA GVVVTTYNMV AFGGKRSEES EKIIEEMRNR
401: EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQA
501: LYVMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTEY AMKLRKPMIY GATSHIERTK ILEAFKTSKD VNTVFLSKVG DNSIDIPEAN VIIQISSHAG
601: SRRQEAQRLG RILRAKGKLE DRMAGGKEEY NAFFYSLVST DTQEMYYSTK RQQFLIDQGY SFKVITSLPP PDAGSSLSYH SQEEQLSLLG KVMNAGDDLV
701: GLEQLEEDTD GMALQKARRS MGSMSVMSGS KGMVYMEYNS GRHKSGQQFK KPKDPTKRHN LFKKRYV

Arabidopsis Description

XPB1DNA repair helicase XPB1 [Source:UniProtKB/Swiss-Prot;Acc:Q38861]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.