Factsheet for Solyc04g050970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031291	Potato	cytosol	94.3	94.46
Solyc05g055860.2.1	Tomato	cytosol	51.87	59.88
GSMUA_Achr5P29320_001	Banana	cytosol	38.5	59.18
GSMUA_Achr6P15570_001	Banana	cytosol	39.22	57.59
GSMUA_Achr5P14180_001	Banana	cytosol, mitochondrion, plastid	34.76	56.52
GSMUA_Achr8P02730_001	Banana	cytosol	35.83	53.89
GSMUA_Achr10P...	Banana	cytosol, plastid	39.75	52.35
Solyc10g085990.1.1	Tomato	plastid	34.58	52.29
Solyc10g005300.2.1	Tomato	cytosol, mitochondrion	35.47	51.16
Solyc04g082510.2.1	Tomato	plastid	33.69	51.08
Solyc09g007170.2.1	Tomato	cytosol, mitochondrion, nucleus	35.47	50.9
GSMUA_Achr4P18960_001	Banana	plasma membrane, plastid	39.22	50.81
Solyc06g083500.2.1	Tomato	nucleus	39.39	50.69
Solyc10g006340.2.1	Tomato	cytosol	36.19	50.0
EES17638	Sorghum	peroxisome, plastid	39.57	49.66
Solyc09g061330.1.1	Tomato	plastid	39.39	49.55
VIT_04s0043g01030.t01	Wine grape	cytosol, plastid	40.46	49.13
Os05t0125400-00	Rice	cytosol	38.32	48.86
Solyc12g005160.1.1	Tomato	cytosol	34.94	48.64
TraesCS3D01G543300.1	Wheat	cytosol	34.22	48.24
HORVU1Hr1G013840.1	Barley	mitochondrion	38.15	48.09
Solyc05g024290.2.1	Tomato	cytosol	39.75	47.96
Solyc06g075550.2.1	Tomato	cytosol, nucleus	34.94	47.69
TraesCS1B01G085000.1	Wheat	plastid	37.61	47.2
TraesCS1A01G066700.1	Wheat	peroxisome, plastid	37.61	47.1
TraesCS1D01G067700.1	Wheat	plastid	37.61	47.1
TraesCS3A01G537900.1	Wheat	cytosol	34.4	47.07
HORVU3Hr1G117850.1	Barley	cytosol	33.51	47.0
TraesCS3B01G603300.1	Wheat	cytosol, plastid	34.22	46.72
Solyc07g064340.2.1	Tomato	plasma membrane	34.05	46.14
Solyc12g094680.1.1	Tomato	cytosol	32.44	45.5
Solyc01g067400.2.1	Tomato	cytosol	40.46	44.42
AT3G02810.1	Thale cress	cytosol	41.53	41.76
Zm00001d041938_P001	Maize	plastid	35.47	41.72
Solyc02g094380.1.1	Tomato	cytosol	31.37	41.31
CDY51533	Canola	cytosol	40.46	41.2
Bra040602.1-P	Field mustard	cytosol	40.46	41.05
CDY28710	Canola	cytosol	40.11	40.69
Solyc11g072660.1.1	Tomato	cytosol	34.76	40.62
KRH68843	Soybean	cytosol	41.89	40.52
CDX92014	Canola	cytosol	40.29	39.72
CDX74234	Canola	cytosol	40.11	39.61
Bra001065.1-P	Field mustard	cytosol	40.11	39.61
KRG97093	Soybean	cytosol	41.71	39.39
CDX78694	Canola	cytosol	40.11	39.06
Bra006358.1-P	Field mustard	cytosol	40.11	39.06
CDX69447	Canola	cytosol	41.18	38.95
CDX70697	Canola	cytosol	40.46	38.8
CDY55581	Canola	cytosol	40.46	38.74
Bra008617.1-P	Field mustard	cytosol	40.82	38.68
AT5G16500.1	Thale cress	cytosol	40.29	35.53
KRG92591	Soybean	cytosol	38.68	35.06
KRH34195	Soybean	cytosol	37.97	33.86

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
UniProt:K4BS59	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00109	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF48	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	EnsemblPlantsGene:Solyc04g050970.2
EnsemblPlants:Solyc04g050970.2.1	InterPro:Tyr_kinase_AS	UniParc:UPI0002766F89	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:49184225..49186758

Molecular Weight (calculated)

62384.8 Da

IEP (calculated)

5.113

GRAVY (calculated)

-0.887

Length

561 amino acids

Sequence
(BLAST)

001: MSCLPCFQSK KTNEPPVQDK PVPVARPAND HPSSSPHFEN NYKASCENGN NNNNRTDHGS SPVENGDSSN AKTFTFRELA SATKNFRQEC LIGEGGFGRV
101: FKGTLQGGEV VAVKQLDRTG TQGNKDFQVE VLLLSLLNHQ NLVNLIGYCA DGDQRMLVYE YRPMGSLADH LIDIKEDQKP LDWQNRMKIA SGAAEGLEYL
201: HEKANPPIIY RDLRTTNILL DEDFTPRLSD YGLAKLAGGG NKSHISPRVM GTYGYSAPEY ERSGELSFKS DVYSFGVVLL EIITGRRAVD TTRLTEEQNL
301: VAWAQPIFRN PKRFREMADP LLKNKFPERS LNQAVGVAAM CLQEEPSVRP LISDVVAALT TLNVDEPIPE SPQSPEKDNT DEYEQKSSDN EALSNKNEDE
401: SSEDDQDNVH YNKKIDINKN VFDSDEDDGA SSDYGYGSTS GSSENEKEDI SLEPGGGIPT KFVKWSSESK RKSKIKSSSR AIRSTSRRKS KVKRSESIIS
501: NDDTEKDTFN LKDNNNHRQQ KNAKSKTVSF SGFSSQSSDD AESDGENDIG SNQSRHVQFR S

Best Arabidopsis Sequence Match ( AT3G02810.1 )
(BLAST)

001: MHCFPCFSSP KNKKSSTTNE TNDNNEPKPD DRRRAEETEE IEQSEGTSLK IFTFRELATA TKNFRQECLL GEGGFGRVYK GTLKSTGQVV AVKQLDKHGL
101: HGNKEFQAEV LSLGQLDHPN LVKLIGYCAD GDQRLLVYDY ISGGSLQDHL HEPKADSDPM DWTTRMQIAY AAAQGLDYLH DKANPPVIYR DLKASNILLD
201: DDFSPKLSDF GLHKLGPGTG DKMMALSSRV MGTYGYSAPE YTRGGNLTLK SDVYSFGVVL LELITGRRAL DTTRPNDEQN LVSWAQPIFR DPKRYPDMAD
301: PVLENKFSER GLNQAVAIAS MCVQEEASAR PLISDVMVAL SFLSMPTEDG IPTTVPILSF KDKSMSIALS RHDSNLVSPP PELATEDDKS STSSGEESSL
401: ESEKESVSKN EYKKKHEEED SSMESDDESD SNSEHEKDQP PKPIDEKNQA QSLKIKYRYS WEDIDVNDER LSSKSSQKSN DESTSSRYDS DRDQDEKGKE
501: EEEEEEAEEK HTHIEHIDSS KTDDDQSVYF DNDDDSGDDN GGSLHRIKSD VAIDSIKE

Arabidopsis Description

LIP2Receptor-like kinase LIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8S2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.