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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
plastid: 20363867
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025866 Potato cytosol 95.68 95.68
Solyc12g094680.1.1 Tomato cytosol 76.49 70.75
KRH51602 Soybean cytosol, plastid 64.32 69.19
KRH60919 Soybean cytosol 66.49 68.52
KRH06009 Soybean cytosol, plastid 62.16 64.43
AT1G20650.1 Thale cress cytosol 65.14 63.25
Bra016457.1-P Field mustard cytosol 64.05 62.86
VIT_18s0122g01240.t01 Wine grape cytosol 68.11 62.84
CDY33638 Canola cytosol 64.05 62.7
CDX96628 Canola cytosol 63.78 62.6
CDY31493 Canola cytosol 63.51 62.5
Bra025835.1-P Field mustard cytosol 64.32 62.47
CDY29515 Canola cytosol 63.78 61.94
GSMUA_Achr4P25510_001 Banana cytosol 42.7 61.0
GSMUA_AchrUn_... Banana cytosol 58.38 60.34
AT1G76370.1 Thale cress cytosol 61.35 59.58
Bra003723.1-P Field mustard cytosol 51.89 58.9
CDX88266 Canola cytosol, nucleus, plastid 60.81 58.75
CDX68101 Canola cytosol 60.27 58.53
CDX85945 Canola cytosol 60.0 58.27
CDX87608 Canola cytosol 60.27 58.22
Bra015756.1-P Field mustard cytosol 60.0 57.96
Solyc10g085990.1.1 Tomato plastid 57.57 57.41
GSMUA_Achr9P23970_001 Banana cytosol 57.57 56.65
GSMUA_Achr1P02780_001 Banana cytosol 56.49 55.44
Solyc09g007170.2.1 Tomato cytosol, mitochondrion, nucleus 58.38 55.24
Zm00001d027508_P002 Maize cytosol 52.7 51.86
EER95576 Sorghum cytosol 52.7 51.72
Os03t0130900-01 Rice cytosol 53.24 51.71
Zm00001d048341_P001 Maize cytosol 52.16 51.6
Solyc10g005300.2.1 Tomato cytosol, mitochondrion 51.62 49.1
Solyc10g006340.2.1 Tomato cytosol 53.51 48.77
TraesCS6A01G206300.2 Wheat mitochondrion, plastid 51.62 48.72
TraesCS5A01G497600.2 Wheat mitochondrion, plastid 51.62 48.72
Solyc06g075550.2.1 Tomato cytosol, nucleus 53.24 47.93
HORVU4Hr1G082140.1 Barley plasma membrane 44.86 47.84
Solyc05g024290.2.1 Tomato cytosol 59.46 47.31
Solyc12g005160.1.1 Tomato cytosol 50.81 46.65
Solyc06g083500.2.1 Tomato nucleus 54.59 46.33
Os02t0833000-01 Rice plasma membrane 45.95 46.2
Solyc09g061330.1.1 Tomato plastid 54.86 45.52
Solyc07g064340.2.1 Tomato plasma membrane 50.81 45.41
Solyc01g067400.2.1 Tomato cytosol 61.89 44.81
TraesCS4D01G322200.3 Wheat plastid 51.89 44.55
Solyc02g094380.1.1 Tomato cytosol 50.0 43.43
Solyc11g072660.1.1 Tomato cytosol 56.22 43.33
TraesCS6B01G470200.1 Wheat mitochondrion, plastid 44.32 42.27
HORVU6Hr1G095300.1 Barley plastid 44.59 39.76
GSMUA_Achr11P... Banana plastid 45.14 39.11
Solyc05g055860.2.1 Tomato cytosol 48.65 37.04
OQU86038 Sorghum plastid 44.86 36.17
Solyc04g050970.2.1 Tomato plastid 51.08 33.69
GSMUA_Achr11P... Banana nucleus 58.65 15.69
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.37.1Gene3D:3.30.200.20GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0004674GO:GO:0004675GO:GO:0004871GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006464GO:GO:0006468GO:GO:0007154
GO:GO:0007165GO:GO:0007166GO:GO:0007178GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0038023InterPro:IPR000719
UniProt:K4BVX8InterPro:Kinase-like_dom_sfPFAM:PF00069PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF100InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc04g082510.2EnsemblPlants:Solyc04g082510.2.1UniParc:UPI000276668DSEG:seg
Description
No Description!
Coordinates
chr4:-:66163398..66166734
Molecular Weight (calculated)
40825.9 Da
IEP (calculated)
8.361
GRAVY (calculated)
-0.286
Length
370 amino acids
Sequence
(BLAST)
001: MGCFSCMRFN RKDVRDFDED MGSRSIKSSG KGIKGRSFGG KGGDSNNHKG NVARSFTFKE LALATQNFRE ANLIGEGGFG SVYKGRLESG LVVAIKQLNL
101: DGLQGHQEFI VEVLMLSLLH HKNLVNLTGY CTDGDQRLLI YEFMPMGSLE NHLFDVEPGK KPLSWSTRLK IASGAAHGLE YLHCKANPPV IYRDLKSSNI
201: LLDNDFNPKL SDFGLAKLGP VGENTHVSTR VMGTYGYCAP EYAMSGKLTL KSDIYSLGVV LLELITGRKA YDNSKEAGEQ NLVVWSRPFL KDRRKFVHMV
301: DPLLNGQFSV RSLHHAVAIT AMCIQEQASF RPIISDIVVA LDYLVSQAES SDSQGGGSQT VKQTHDHKDN
Best Arabidopsis Sequence Match ( AT1G20650.1 )
(BLAST)
001: MTCCFSCLNP RTKDIRVDID NARCNSRYQT DSSVHGSDTT GTESISGILV NGKVNSPIPG GGARSFTFKE LAAATRNFRE VNLLGEGGFG RVYKGRLDSG
101: QVVAIKQLNP DGLQGNREFI VEVLMLSLLH HPNLVTLIGY CTSGDQRLLV YEYMPMGSLE DHLFDLESNQ EPLSWNTRMK IAVGAARGIE YLHCTANPPV
201: IYRDLKSANI LLDKEFSPKL SDFGLAKLGP VGDRTHVSTR VMGTYGYCAP EYAMSGKLTV KSDIYCFGVV LLELITGRKA IDLGQKQGEQ NLVTWSRPYL
301: KDQKKFGHLV DPSLRGKYPR RCLNYAIAII AMCLNEEAHY RPFIGDIVVA LEYLAAQSRS HEARNVSSPS PEISRTPRRD L
Arabidopsis Description
PBL21ASG5 [Source:UniProtKB/TrEMBL;Acc:A0A178W8H8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.