Factsheet for Solyc03g121020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc06g075780.1.1
Solyc11g005270.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79730.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G79730.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT1G79730.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT1G79730.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03510.t01	Wine grape	nucleus	65.33	64.96
KRH47209	Soybean	nucleus	60.6	64.19
KRH44275	Soybean	nucleus	59.6	62.46
Os08t0157100-01	Rice	mitochondrion	37.82	58.54
AT1G79730.1	Thale cress	nucleus	49.28	58.4
TraesCS3D01G002000.1	Wheat	nucleus	28.94	58.21
Bra009582.1-P	Field mustard	nucleus	47.28	57.29
CDY40363	Canola	nucleus	47.28	57.19
CDY10443	Canola	nucleus	46.7	56.4
TraesCS7A01G299200.1	Wheat	nucleus	41.83	54.07
TraesCS7B01G200900.2	Wheat	nucleus	45.85	51.95
TraesCS7D01G026600.2	Wheat	nucleus, plastid	46.13	51.94
KXG24466	Sorghum	nucleus	47.42	51.72
HORVU3Hr1G001430.1	Barley	nucleus	45.7	50.88
TraesCS3B01G012200.1	Wheat	nucleus	45.27	50.08
TraesCS3A01G009400.2	Wheat	nucleus	46.28	50.0
Zm00001d049548_P004	Maize	nucleus, plastid	46.99	45.43
Zm00001d024567_P004	Maize	nucleus	45.7	41.64
GSMUA_Achr3P00330_001	Banana	nucleus	48.14	27.27

Protein Annotations

MapMan:15.3.6.1.1	ncoils:Coil	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006368	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	GO:GO:0016570	GO:GO:0016571	GO:GO:0016593	GO:GO:0019538
UniProt:K4BMQ1	PFAM:PF03985	PANTHER:PTHR23188	InterPro:RNA_pol_II-assoc_Paf1	EnsemblPlantsGene:Solyc03g121020.2	EnsemblPlants:Solyc03g121020.2.1
UniParc:UPI0002767129	SEG:seg	:	:	:	:

Description

Protein PAF1 homolog [Source:Projected from Arabidopsis thaliana (AT1G79730) UniProtKB/Swiss-Prot;Acc:F4HQA1]

Coordinates

chr3:+:69248852..69256015

Molecular Weight (calculated)

78648.6 Da

IEP (calculated)

9.312

GRAVY (calculated)

-1.194

Length

698 amino acids

Sequence
(BLAST)

001: MASYRPFPPS SQSSFVPPPP PPQNQNPPPP PSQSRGSQYS QNWGGYGVND GSSYAQQNYS QVHQGSNYQH PGYVPPPPAT RNQYPPPPPP PADSSYPPPP
101: PPSGQPPPPP APMYYPSSQD SQYSQNHPLE PPPPPPPPSS PPTSAIPPPP PPSQPPSPPP PPSSVPPQKQ RNESRHSVEK RRESGWRESR HGNHTARSKQ
201: PDHSVPPLPM KKSNAHSGRV ETEEERRSRK KREIEKQRHE EKNRQHLKES QNKVLQKTQM LTSGTKGHGS ISASHMADRR TTPLLSGERT ENRLKKPTTF
301: LCKLKFRNEL PDPTAQPKLL TLRRDPDRFT KYSITSLEKM HKPQLHVEPD LGIPLDLLDL SVYNPPKGVK IPLAPEDEEL LRDDNPITPI KKDGIKKKER
401: PTDKGVSWLV KTQYISPLST ESAKQSLTEK QAKELRETKG GRNILENLNK RDRQIQEIEA SFEACKSRPI HASNRRLQPI KVQPLYPDFD RYKDPFVLAN
501: YDSAPTADSE TYSKLDKTVR DACESQAVMK SFVATSSDAD KPDKFLAYMV PAPNELSKDI YDESEDISYS WVREYHWDVR GDDADDPNTY VVAFGEREAR
601: YMPLPTKLVL RKKRAREGKS NEEVEHFPVP SRVTVRKRPT AAAIELKEEG GYTTALKGNV SSSKRSRISH EDDVGEQHNN MHDDDQDQSS GGEYYMSD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.