Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47209 | Soybean | nucleus | 95.2 | 96.21 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 67.42 | 63.96 |
| AT1G79730.1 | Thale cress | nucleus | 53.3 | 60.27 |
| Os08t0157100-01 | Rice | mitochondrion | 40.54 | 59.87 |
| Solyc03g121020.2.1 | Tomato | nucleus | 62.46 | 59.6 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 30.93 | 59.37 |
| Bra009582.1-P | Field mustard | nucleus | 51.05 | 59.03 |
| CDY40363 | Canola | nucleus | 50.0 | 57.71 |
| CDY10443 | Canola | nucleus | 49.7 | 57.27 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 43.99 | 54.26 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 47.75 | 51.62 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 47.75 | 51.29 |
| KXG24466 | Sorghum | nucleus | 49.25 | 51.25 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 48.5 | 51.19 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 47.9 | 50.88 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 48.8 | 50.31 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 48.95 | 45.15 |
| Zm00001d024567_P004 | Maize | nucleus | 48.35 | 42.04 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 49.7 | 26.87 |
Protein Annotations
| MapMan:15.3.6.1.1 | EMBL:ACUP02004925 | EnsemblPlantsGene:GLYMA_08G201000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 |
| GO:GO:0019538 | UniProt:I1KV19 | EnsemblPlants:KRH44275 | ProteinID:KRH44275 | ProteinID:KRH44275.1 | PFAM:PF03985 |
| InterPro:RNA_pol_II-assoc_Paf1 | UniParc:UPI0002338C8F | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:16257343..16261769
Molecular Weight (calculated)
75340.3 Da
IEP (calculated)
8.664
GRAVY (calculated)
-1.109
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPFPPQ SSQIPNPIPG GNHQYNNNNN QNQNWGAYGD PSTSSFPQIP PNSNYHQNQH HVPYAPAPSN PHHPPHYPYP PPPPPPPPPE ASYQPPPPPP
101: PPAPMYYPSS SQYSNQPPPP PPPLSPPPPP PPVSPPPPPP ATQNNNEERR FKEPSKSGRR EYEHSNHGIA HKQHKQQQPP LPVKKMNNGP PGRAETDEEK
201: RLRKKREFEK QRQEEKHRQQ LKESQNTVLQ KTHLLSSGKG HGMIAGSRMG ERRSTPLLGA ERVENRLKKP TTFLCKLKFR NELPDPSAQP KLMSFKKDKD
301: QYAKYTITSL EKMYKPKLFV EPDLGIPLDL LDLSVYNPPR VRPPLAPEDE ELLRDDEAAT PIKKDGIKRK ERPTDKGVAW LVKTQYISPL SMESTKQSLT
401: EKQAKELREM KGRGILDNLN SRERQIREIQ ASFEAAKSDP VHATNKDLYP VEVMPLLPDF DRYDDQFVVA AFDNAPTADS EMYAKMNKSV RDAFESKAVM
501: KSYVATGLDP ANPEKFLAYM APAPGELSKD IYDENEDVSY SWIREYHWDV RGDDADDPTT FLVAFDESEA RYLPLPTKLV LRKKRAKEGR SGDEVEQCPV
601: PARVTVRRRS SVAAIERKDS GVYTSSKGNS FKRVGLEMDD GLEDQHRGAP HQDNYQSSGA EDYMSD
101: PPAPMYYPSS SQYSNQPPPP PPPLSPPPPP PPVSPPPPPP ATQNNNEERR FKEPSKSGRR EYEHSNHGIA HKQHKQQQPP LPVKKMNNGP PGRAETDEEK
201: RLRKKREFEK QRQEEKHRQQ LKESQNTVLQ KTHLLSSGKG HGMIAGSRMG ERRSTPLLGA ERVENRLKKP TTFLCKLKFR NELPDPSAQP KLMSFKKDKD
301: QYAKYTITSL EKMYKPKLFV EPDLGIPLDL LDLSVYNPPR VRPPLAPEDE ELLRDDEAAT PIKKDGIKRK ERPTDKGVAW LVKTQYISPL SMESTKQSLT
401: EKQAKELREM KGRGILDNLN SRERQIREIQ ASFEAAKSDP VHATNKDLYP VEVMPLLPDF DRYDDQFVVA AFDNAPTADS EMYAKMNKSV RDAFESKAVM
501: KSYVATGLDP ANPEKFLAYM APAPGELSKD IYDENEDVSY SWIREYHWDV RGDDADDPTT FLVAFDESEA RYLPLPTKLV LRKKRAKEGR SGDEVEQCPV
601: PARVTVRRRS SVAAIERKDS GVYTSSKGNS FKRVGLEMDD GLEDQHRGAP HQDNYQSSGA EDYMSD
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.