Factsheet for VIT_09s0002g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79730.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47209	Soybean	nucleus	64.67	68.89
KRH44275	Soybean	nucleus	63.96	67.42
Solyc03g121020.2.1	Tomato	nucleus	64.96	65.33
AT1G79730.1	Thale cress	nucleus	51.42	61.29
CDY40363	Canola	nucleus	49.29	59.97
Bra009582.1-P	Field mustard	nucleus	49.15	59.9
CDY10443	Canola	nucleus	49.29	59.86
Os08t0157100-01	Rice	mitochondrion	37.61	58.54
TraesCS3D01G002000.1	Wheat	nucleus	28.49	57.64
TraesCS7A01G299200.1	Wheat	nucleus	41.45	53.89
TraesCS7B01G200900.2	Wheat	nucleus	46.15	52.6
TraesCS7D01G026600.2	Wheat	nucleus, plastid	46.15	52.26
HORVU3Hr1G001430.1	Barley	nucleus	46.15	51.67
KXG24466	Sorghum	nucleus	46.58	51.09
TraesCS3B01G012200.1	Wheat	nucleus	45.44	50.55
TraesCS3A01G009400.2	Wheat	nucleus	46.15	50.15
Zm00001d049548_P004	Maize	nucleus, plastid	46.87	45.57
Zm00001d024567_P004	Maize	nucleus	45.44	41.64
GSMUA_Achr3P00330_001	Banana	nucleus	50.28	28.65

Protein Annotations

EntrezGene:100254912	wikigene:100254912	MapMan:15.3.6.1.1	ProteinID:CCB59425	ProteinID:CCB59425.1	ncoils:Coil
UniProt:F6HYA2	EMBL:FN596494	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006368	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016043	GO:GO:0016570	GO:GO:0016571	GO:GO:0016593	GO:GO:0019538
EntrezGene:LOC100254912	wikigene:LOC100254912	PFAM:PF03985	PANTHER:PTHR23188	InterPro:RNA_pol_II-assoc_Paf1	UniParc:UPI0001983F77
ArrayExpress:VIT_09s0002g03510	EnsemblPlantsGene:VIT_09s0002g03510	EnsemblPlants:VIT_09s0002g03510.t01	RefSeq:XP_002278075	RefSeq:XP_002278075.2	RefSeq:XP_002278075.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:3157378..3165550

Molecular Weight (calculated)

78403.7 Da

IEP (calculated)

9.457

GRAVY (calculated)

-1.137

Length

702 amino acids

Sequence
(BLAST)

001: MASYRPFPPQ SSFPPPPNQN PVPQQPPPQP HPPQQRGNQY PQNWGYPNSN YHHGGYGSSA SSSQHYGGPS RTQHPPPPPH QQQQYPYPPP PLDSTYPPPP
101: PPPASMPQPP QGPMYYPSSQ YSQFSHQPMQ PPPPPPPSSP PPSSLIPPPP PPASPPPPPS SVPPQGQNKE PAPDGGSHGR DKGAPKDLRG AGRREPGHSN
201: QGPSGKQQKP PVPPAPVKKS NGPPGRVETE EERRLRKKRE FEKQRQEEKQ KHQLKESQNT VLQKTQMLSS GKGHGSVVGG SRMGERRTTP FLSGDRIENR
301: LRKPTTFLCK LKFRNELPDP TAQPKLMALK TDKDRFTKYT ITSLEKMHKP QLFVEPDLGI PLDLLDLSVY NPPSVRRPLD PEDEELLRDD ESVTPVKKEG
401: IKKKERPTDK GVSWLVKTQY ISPLSTESTK QSLTEKQAKE LRETKGGRNI LENFNSRERK IQNIEAAFAA SKITPVHSTN KSLKPVEILP LLPDFARYDD
501: SFVVASFDSA PTADSEIYSK LDKTVRDSHE SQAILKSYMA TGSDPSKPEK FLAYMAPSPD ELSKDIYDEN EDTSYSWVRE YHWDVRGDDA DDPTTYLVSF
601: NKTDARYLPL PTKLLLRKKR AKEGRSSDEV EHFPVPSKVT VRQRPNVAAI ELKDEEVYSS SKRGVSSSKR GVDMEDGLGR SYKGVQDQHM DQSSGAEDEM
701: SD

Best Arabidopsis Sequence Match ( AT1G79730.1 )
(BLAST)

001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE

Arabidopsis Description

VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.