Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G200900.2 | Wheat | nucleus | 98.33 | 86.2 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 98.52 | 85.81 |
| Os08t0157100-01 | Rice | mitochondrion | 71.3 | 85.37 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 89.26 | 74.61 |
| KXG24466 | Sorghum | nucleus | 79.81 | 67.34 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 79.07 | 59.14 |
| Zm00001d024567_P004 | Maize | nucleus | 75.74 | 53.39 |
| AT1G79730.1 | Thale cress | nucleus | 51.11 | 46.86 |
| Bra009582.1-P | Field mustard | nucleus | 47.96 | 44.97 |
| CDY40363 | Canola | nucleus | 47.78 | 44.71 |
| CDY10443 | Canola | nucleus | 47.59 | 44.46 |
| KRH44275 | Soybean | nucleus | 54.26 | 43.99 |
| KRH47209 | Soybean | nucleus | 53.52 | 43.85 |
| Solyc03g121020.2.1 | Tomato | nucleus | 54.07 | 41.83 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 53.89 | 41.45 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 57.41 | 25.16 |
Protein Annotations
| MapMan:15.3.6.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 |
| PFAM:PF03985 | PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 | EnsemblPlantsGene:TraesCS7A01G299200 | EnsemblPlants:TraesCS7A01G299200.1 | SEG:seg |
Description
No Description!
Coordinates
chr7A:+:409253953..409263358
Molecular Weight (calculated)
62107.1 Da
IEP (calculated)
6.929
GRAVY (calculated)
-1.141
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYQPPPPPY GGNNNQAPPP PPPMSPPPSA PPPPPAQPPP RVAPPPPKEQ QAKAALPRVE MEEQRRARKK REYEKQKVED RKQQQMMRQS QATILQKTQQ
101: VRAAQQQQQP QPQSRHLQPS GGTRVATTVS RPASAPNTER FENRLKKPTT FLCKHRFRNE LPDPSAQLKW LPLNKDKDRY TKYRISSLEK NYLPKMIVPE
201: DLGIPLDLLD MTVYNPPAAQ LPLAPEDEEL LRDDEVLTPV KPEGIRKKER PTDKGMSWLV KTQYISPLST DAAKMSITEK QAKERRESRE GRDNVLENLN
301: DRQKRIKAIA ESFKAAKSRP VHQTKRGMEP EFVLPLVPDF DRYNDPFVMV NFDGDPTADS EQYNKLERPV RDECESQALM KSFQVSGSDP AKQEKFLAYM
401: APAPHELVKD LDDENEDFQY SWIREYHWEV RGDDKQDPTT YLVSFDDDDA KYLPLPTKLV LQKKKAKEGR SGDEIEHFPV PSRIIVSRTA HGDQMEHGES
501: SSMHGNLKRQ RSSVDDDLDE HPRHSRVEDM GQYSEEDYSD
101: VRAAQQQQQP QPQSRHLQPS GGTRVATTVS RPASAPNTER FENRLKKPTT FLCKHRFRNE LPDPSAQLKW LPLNKDKDRY TKYRISSLEK NYLPKMIVPE
201: DLGIPLDLLD MTVYNPPAAQ LPLAPEDEEL LRDDEVLTPV KPEGIRKKER PTDKGMSWLV KTQYISPLST DAAKMSITEK QAKERRESRE GRDNVLENLN
301: DRQKRIKAIA ESFKAAKSRP VHQTKRGMEP EFVLPLVPDF DRYNDPFVMV NFDGDPTADS EQYNKLERPV RDECESQALM KSFQVSGSDP AKQEKFLAYM
401: APAPHELVKD LDDENEDFQY SWIREYHWEV RGDDKQDPTT YLVSFDDDDA KYLPLPTKLV LQKKKAKEGR SGDEIEHFPV PSRIIVSRTA HGDQMEHGES
501: SSMHGNLKRQ RSSVDDDLDE HPRHSRVEDM GQYSEEDYSD
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.