Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G299200.1 | Wheat | nucleus | 85.81 | 98.52 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 96.29 | 96.92 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 51.94 | 92.8 |
| Os08t0157100-01 | Rice | mitochondrion | 62.1 | 85.37 |
| KXG24466 | Sorghum | nucleus | 77.74 | 75.31 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 77.1 | 66.2 |
| Zm00001d024567_P004 | Maize | nucleus | 72.9 | 59.01 |
| AT1G79730.1 | Thale cress | nucleus | 48.23 | 50.76 |
| CDY40363 | Canola | nucleus | 45.48 | 48.87 |
| Bra009582.1-P | Field mustard | nucleus | 45.32 | 48.78 |
| CDY10443 | Canola | nucleus | 45.0 | 48.27 |
| KRH44275 | Soybean | nucleus | 51.29 | 47.75 |
| KRH47209 | Soybean | nucleus | 50.65 | 47.65 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 52.26 | 46.15 |
| Solyc03g121020.2.1 | Tomato | nucleus | 51.94 | 46.13 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 52.26 | 26.3 |
Protein Annotations
| MapMan:15.3.6.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 |
| PFAM:PF03985 | PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 | EnsemblPlantsGene:TraesCS7D01G026600 | EnsemblPlants:TraesCS7D01G026600.2 | SEG:seg |
Description
No Description!
Coordinates
chr7D:+:12897777..12904950
Molecular Weight (calculated)
70778.3 Da
IEP (calculated)
7.244
GRAVY (calculated)
-1.177
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRPYPPPQ GAFPPQARPV NPYGQPPPPP PPQAGYGQMP PPQFHAPPPP PPGPPPPHQP QYNFGHVPPQ QQQQPPPPPQ MYYQPPPPPY GGNNNQAPPP
101: PPPMSPPPSA PPPPPAQPPP RVAPPPPKEQ QAKAALPRVE TEEERRARKK REYEKQKVED RKQQQMMRQS QATILQKTQQ VRAAQQQKQP QPQSRHLQPS
201: GGTRVATTVS RPASAPNTER FENRLKKPTT FLCKHKFRNE LPDPSAQLKW LPLNKDKDRY TKYRISSLEK NYLPKMIVPE DLGIPLDLLD MTVYNPPASQ
301: LPLAPEDEEL LRDDEVLTPV KPEGIRKKER PTDKGMSWLV KTQYISPLST DAAKMSITEK QAKERRESRE GRDNVLEYLN DRQKRIKAIA ESFKAAKSRP
401: VHQTKRGMEP EFVLPLVPDF DRYNDPFVMV NFDGDPTADS EQYNKLERTV RDECESQALM KSFQVSGSDP AKQEKFLAYM APAPHELVKD LDDENEDFQY
501: SWIREYHWEV RGDDKQDPTT YLVSFDDDDA KYLPLPTKLV LQKKKAKEGR SGDEIEHFPV PSRIIVSRTA HGDEMEHGES SSMHGNLKRQ RSSVDDDLDE
601: HPRHSRVEDM GQYSEEDYSD
101: PPPMSPPPSA PPPPPAQPPP RVAPPPPKEQ QAKAALPRVE TEEERRARKK REYEKQKVED RKQQQMMRQS QATILQKTQQ VRAAQQQKQP QPQSRHLQPS
201: GGTRVATTVS RPASAPNTER FENRLKKPTT FLCKHKFRNE LPDPSAQLKW LPLNKDKDRY TKYRISSLEK NYLPKMIVPE DLGIPLDLLD MTVYNPPASQ
301: LPLAPEDEEL LRDDEVLTPV KPEGIRKKER PTDKGMSWLV KTQYISPLST DAAKMSITEK QAKERRESRE GRDNVLEYLN DRQKRIKAIA ESFKAAKSRP
401: VHQTKRGMEP EFVLPLVPDF DRYNDPFVMV NFDGDPTADS EQYNKLERTV RDECESQALM KSFQVSGSDP AKQEKFLAYM APAPHELVKD LDDENEDFQY
501: SWIREYHWEV RGDDKQDPTT YLVSFDDDDA KYLPLPTKLV LQKKKAKEGR SGDEIEHFPV PSRIIVSRTA HGDEMEHGES SSMHGNLKRQ RSSVDDDLDE
601: HPRHSRVEDM GQYSEEDYSD
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.