Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24466 | Sorghum | nucleus | 80.47 | 90.78 |
| Os08t0157100-01 | Rice | mitochondrion | 53.05 | 84.92 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 38.78 | 80.69 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 59.14 | 79.07 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 66.07 | 77.44 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 66.2 | 77.1 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 65.65 | 75.12 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 64.96 | 74.8 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 65.79 | 73.53 |
| Zm00001d024567_P004 | Maize | nucleus | 73.96 | 69.71 |
| AT1G79730.1 | Thale cress | nucleus | 41.83 | 51.27 |
| Bra009582.1-P | Field mustard | nucleus | 40.3 | 50.52 |
| CDY40363 | Canola | nucleus | 40.17 | 50.26 |
| CDY10443 | Canola | nucleus | 39.89 | 49.83 |
| KRH47209 | Soybean | nucleus | 44.74 | 49.01 |
| KRH44275 | Soybean | nucleus | 45.15 | 48.95 |
| Solyc03g121020.2.1 | Tomato | nucleus | 45.43 | 46.99 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 45.57 | 46.87 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 45.43 | 26.62 |
Protein Annotations
| MapMan:15.3.6.1.1 | UniProt:A0A1D6PVZ8 | ProteinID:AQK50746.1 | ProteinID:AQK50751.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 | PFAM:PF03985 |
| InterPro:RNA_pol_II-assoc_Paf1 | TMHMM:TMhelix | UniParc:UPI000842EDA5 | EnsemblPlantsGene:Zm00001d049548 | EnsemblPlants:Zm00001d049548_P004 | EnsemblPlants:Zm00001d049548_T004 |
| SEG:seg | : | : | : | : | : |
Description
Protein PAF1 homolog
Coordinates
chr4:+:34363798..34372117
Molecular Weight (calculated)
81784.8 Da
IEP (calculated)
8.822
GRAVY (calculated)
-0.952
Length
722 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPYAPP PQHPPPPPPP PQGGYPPQMN SYAPPPQQAP YSRMPAPTYH AGPPPPPPPG PPPPHQPQFN FGPGPPQQLP PPPPPQMYYQ PPPPPYGGNS
101: NPPPPPSAPP PPPSPPPAAS PPPPPPPAQP PSAHALLPPK GPQPKATLLR AETEEERRAR KKREFEKQRV DDRKQHQMMR QTQATILQKT QQVRTAQQQP
201: QSRHHHHHPP GGSRAGATGS RPATAVNAER FENRLKKPTT FLCKHKFRNE LPDPSAQLKW LPLNKDKDRN PLFCFLLASN LCLAFAVFLV ILFIVLWIDV
301: KTEARFHWAN MGKASDYRRY TKYRITSLEK NYIPKMIVPE DIGIPLDLLD MSVYNPPDVQ PPMAPEDEEL LRDDQVLTPI KQEGTRKRER PTDKGVSWLV
401: KTQYISPLSA DAAKTSLTEK QAKERRESRG GRNAFLDNLN DREKQIKAIE ESFRAAKSRP VHQTKRGMQA EWVMPLLPDF DRYEEPFVMV NFDGDPTADS
501: EQYNKLERPV RDECESRISV TRTCMSFFFA ALTCITRHEP AMHHVCLDPS MSYLSARAQA VMKSFSVSGS DPSKQEKFLA YMAPAPHELT RDLDDENDDI
601: QYSWLREYHW EVRGDDKDDP TTYLVTFDKK DGAKYLPLPT KLVLQKKKAK EGRSGDEIEH FPVPSRITVS KTAHGGTMER GESSGMHANS KPRRSHVDDD
701: LDEHPKRTRV EDIDQYSEEY SE
101: NPPPPPSAPP PPPSPPPAAS PPPPPPPAQP PSAHALLPPK GPQPKATLLR AETEEERRAR KKREFEKQRV DDRKQHQMMR QTQATILQKT QQVRTAQQQP
201: QSRHHHHHPP GGSRAGATGS RPATAVNAER FENRLKKPTT FLCKHKFRNE LPDPSAQLKW LPLNKDKDRN PLFCFLLASN LCLAFAVFLV ILFIVLWIDV
301: KTEARFHWAN MGKASDYRRY TKYRITSLEK NYIPKMIVPE DIGIPLDLLD MSVYNPPDVQ PPMAPEDEEL LRDDQVLTPI KQEGTRKRER PTDKGVSWLV
401: KTQYISPLSA DAAKTSLTEK QAKERRESRG GRNAFLDNLN DREKQIKAIE ESFRAAKSRP VHQTKRGMQA EWVMPLLPDF DRYEEPFVMV NFDGDPTADS
501: EQYNKLERPV RDECESRISV TRTCMSFFFA ALTCITRHEP AMHHVCLDPS MSYLSARAQA VMKSFSVSGS DPSKQEKFLA YMAPAPHELT RDLDDENDDI
601: QYSWLREYHW EVRGDDKDDP TTYLVTFDKK DGAKYLPLPT KLVLQKKKAK EGRSGDEIEH FPVPSRITVS KTAHGGTMER GESSGMHANS KPRRSHVDDD
701: LDEHPKRTRV EDIDQYSEEY SE
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.