Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra006216.1-P | |
| Bra008801.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79730.1 | Bra006216.1-P | AT5G13810.1 | 21798944 |
| AT1G79730.1 | Bra008801.1-P | AT5G13810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10443 | Canola | nucleus | 93.58 | 93.25 |
| CDY40363 | Canola | nucleus | 93.4 | 93.24 |
| AT1G79730.1 | Thale cress | nucleus | 78.3 | 76.57 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 31.77 | 52.74 |
| KRH47209 | Soybean | nucleus | 59.9 | 52.35 |
| Os08t0157100-01 | Rice | mitochondrion | 40.8 | 52.11 |
| KRH44275 | Soybean | nucleus | 59.03 | 51.05 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 59.9 | 49.15 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 44.97 | 47.96 |
| Solyc03g121020.2.1 | Tomato | nucleus | 57.29 | 47.28 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 48.78 | 45.62 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 48.78 | 45.32 |
| KXG24466 | Sorghum | nucleus | 50.35 | 45.31 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 48.78 | 44.82 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 48.96 | 44.69 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 49.31 | 43.96 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 50.52 | 40.3 |
| Zm00001d024567_P004 | Maize | nucleus | 48.61 | 36.55 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 48.26 | 22.56 |
Protein Annotations
| MapMan:15.3.6.1.1 | EnsemblPlantsGene:Bra009582 | EnsemblPlants:Bra009582.1 | EnsemblPlants:Bra009582.1-P | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006368 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 |
| GO:GO:0016571 | GO:GO:0016593 | GO:GO:0019538 | UniProt:M4CZD5 | PFAM:PF03985 | PANTHER:PTHR23188 |
| InterPro:RNA_pol_II-assoc_Paf1 | UniParc:UPI0002547D0F | SEG:seg | : | : | : |
Description
AT1G79730 (E=7e-208) ELF7 | ELF7 (EARLY FLOWERING 7)
Coordinates
chrA10:+:17300905..17303658
Molecular Weight (calculated)
66124.7 Da
IEP (calculated)
9.222
GRAVY (calculated)
-1.172
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPPPPP SPLPPPPQNP PPPPPLPPSL PPPVPPPPPS HQPYAYPPHT YYQQPSHYPP PQFNQHQAPP PPPPPPSAPP PTVPEPPRNQ STNDRHKAAS
101: KPPRERPPSK QHHRPHHPHS KNPEEERRQR KKREAEKERQ QMKTTSHKSQ VPKGHTEERK PTPLLTADRV ENRLKKPTTF ICKLKFRNEL PDPTAQLKLM
201: TIKRDKDQYT KYTITSLEKL WKPKIFAEPD LGIPLDLLDL SVYKPPKVRQ PLAPEDEELL RDDDAVTPIK KDGIKRKERP TDKGVSWLVK TQYISSINNE
301: STRQSLTEKR AKELREMKGG VDILQNLNNR ERQIKDIEAS FEACKSRPVH ATNKKLQPVE VLPLLPYFDR YEEQFVVANF DSAPTADSEF FGKLDSSIRD
401: EHESRAVLKS YVIAGSDNSN PEKILAYMVP SLDELSKDMH DENEDISYTW VREYLWDIPP KEPNERDTYL VSFEDGTASY LPLPTRLNMR KRRAREGRAS
501: DEIEHLPVPS RVTVRNRSSV SIIEHKDSMV NTNSRNGASS SKMRRLEDEE GLGRSWKHGS EQDANQYSDN NDDYSE
101: KPPRERPPSK QHHRPHHPHS KNPEEERRQR KKREAEKERQ QMKTTSHKSQ VPKGHTEERK PTPLLTADRV ENRLKKPTTF ICKLKFRNEL PDPTAQLKLM
201: TIKRDKDQYT KYTITSLEKL WKPKIFAEPD LGIPLDLLDL SVYKPPKVRQ PLAPEDEELL RDDDAVTPIK KDGIKRKERP TDKGVSWLVK TQYISSINNE
301: STRQSLTEKR AKELREMKGG VDILQNLNNR ERQIKDIEAS FEACKSRPVH ATNKKLQPVE VLPLLPYFDR YEEQFVVANF DSAPTADSEF FGKLDSSIRD
401: EHESRAVLKS YVIAGSDNSN PEKILAYMVP SLDELSKDMH DENEDISYTW VREYLWDIPP KEPNERDTYL VSFEDGTASY LPLPTRLNMR KRRAREGRAS
501: DEIEHLPVPS RVTVRNRSSV SIIEHKDSMV NTNSRNGASS SKMRRLEDEE GLGRSWKHGS EQDANQYSDN NDDYSE
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.