Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44275 | Soybean | nucleus | 96.21 | 95.2 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 68.89 | 64.67 |
| AT1G79730.1 | Thale cress | nucleus | 54.48 | 60.95 |
| Solyc03g121020.2.1 | Tomato | nucleus | 64.19 | 60.6 |
| Bra009582.1-P | Field mustard | nucleus | 52.35 | 59.9 |
| Os08t0157100-01 | Rice | mitochondrion | 40.82 | 59.65 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 30.96 | 58.79 |
| CDY40363 | Canola | nucleus | 51.44 | 58.75 |
| CDY10443 | Canola | nucleus | 51.14 | 58.3 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 43.85 | 53.52 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 47.65 | 50.97 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 48.56 | 50.71 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 47.65 | 50.65 |
| KXG24466 | Sorghum | nucleus | 49.01 | 50.47 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 47.8 | 50.24 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 48.71 | 49.69 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 49.01 | 44.74 |
| Zm00001d024567_P004 | Maize | nucleus | 48.1 | 41.38 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 50.68 | 27.11 |
Protein Annotations
| MapMan:15.3.6.1.1 | EMBL:ACUP02004142 | ncoils:Coil | EnsemblPlantsGene:GLYMA_07G015500 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 |
| GO:GO:0016593 | GO:GO:0019538 | UniProt:I1KGI6 | EnsemblPlants:KRH47209 | ProteinID:KRH47209 | ProteinID:KRH47209.1 |
| ProteinID:KRH47210.1 | PFAM:PF03985 | InterPro:RNA_pol_II-assoc_Paf1 | SUPFAM:SSF101447 | UniParc:UPI0002337C48 | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:-:1219582..1223926
Molecular Weight (calculated)
74377.1 Da
IEP (calculated)
7.891
GRAVY (calculated)
-1.103
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPFPPQ SSQIPNPIPG GNHQYNNNQN QNWGAYGDPS TSSFPQIPPN SNYHQNQQHH VPYAPPNPHH PHYPYPPPPP PPPPEASYQP PPPPPPAPMY
101: YPSNNQYSNQ PPPPPPPLSP PPPPPPVSPP PPPAVTQNNE ERHFKEPSTS GRREYEHSNH GIAHKQHKQQ PPVPVKKMNN GPPGRAETDE EKRLRKKREF
201: EKQRQEEKHR QQLKESQNTV LQKTHMLSSG KGHGMIAGSR MGERRSTPLL GAERVENRLK KPTTFLCKLK FRNELPDPSA QPKLMASKKD KDQYAKYTIT
301: SLEKMYKPKL FVEPDLGIPL DLLDLSVYNP PSVRPPLAPE DKELLRDDEA VTPIKKDGIK RKERPTDKGV AWLVKTQYIS PLSMESTKQS LTEKQAKELR
401: EMKGGRGILD NLNSRERQIR EIEASFEAAK SDPVHATNKD LYPVEVMPLL PDFDRYDDQF VVAAFDNAPT ADSEMHAKMD KSVRDAFESK AVMKSYVATS
501: SDPANPEKFL AYMVPAPGEL SKDIYDENED VSYSWIREYH WDVRGDDADD PATFLVAFDE SEARYLPLPT KLVLRKKRAK EGRSGDEVEQ CPVPARVTVR
601: RRSSVAAIER KDSGVYTSSK GNSSKRGGLE MDDGLEDQHR GAPHQDNYQS SGAEDYMSD
101: YPSNNQYSNQ PPPPPPPLSP PPPPPPVSPP PPPAVTQNNE ERHFKEPSTS GRREYEHSNH GIAHKQHKQQ PPVPVKKMNN GPPGRAETDE EKRLRKKREF
201: EKQRQEEKHR QQLKESQNTV LQKTHMLSSG KGHGMIAGSR MGERRSTPLL GAERVENRLK KPTTFLCKLK FRNELPDPSA QPKLMASKKD KDQYAKYTIT
301: SLEKMYKPKL FVEPDLGIPL DLLDLSVYNP PSVRPPLAPE DKELLRDDEA VTPIKKDGIK RKERPTDKGV AWLVKTQYIS PLSMESTKQS LTEKQAKELR
401: EMKGGRGILD NLNSRERQIR EIEASFEAAK SDPVHATNKD LYPVEVMPLL PDFDRYDDQF VVAAFDNAPT ADSEMHAKMD KSVRDAFESK AVMKSYVATS
501: SDPANPEKFL AYMVPAPGEL SKDIYDENED VSYSWIREYH WDVRGDDADD PATFLVAFDE SEARYLPLPT KLVLRKKRAK EGRSGDEVEQ CPVPARVTVR
601: RRSSVAAIER KDSGVYTSSK GNSSKRGGLE MDDGLEDQHR GAPHQDNYQS SGAEDYMSD
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.