Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G299200.1 | Wheat | nucleus | 86.2 | 98.33 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 96.92 | 96.29 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 88.8 | 86.69 |
| Os08t0157100-01 | Rice | mitochondrion | 62.82 | 85.81 |
| KXG24466 | Sorghum | nucleus | 77.92 | 75.0 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 77.44 | 66.07 |
| Zm00001d024567_P004 | Maize | nucleus | 73.05 | 58.75 |
| AT1G79730.1 | Thale cress | nucleus | 48.86 | 51.1 |
| CDY40363 | Canola | nucleus | 45.94 | 49.05 |
| Bra009582.1-P | Field mustard | nucleus | 45.62 | 48.78 |
| CDY10443 | Canola | nucleus | 45.45 | 48.44 |
| KRH44275 | Soybean | nucleus | 51.62 | 47.75 |
| KRH47209 | Soybean | nucleus | 50.97 | 47.65 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 52.6 | 46.15 |
| Solyc03g121020.2.1 | Tomato | nucleus | 51.95 | 45.85 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 53.25 | 26.62 |
Protein Annotations
| MapMan:15.3.6.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 |
| PFAM:PF03985 | PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 | EnsemblPlantsGene:TraesCS7B01G200900 | EnsemblPlants:TraesCS7B01G200900.2 | SEG:seg |
Description
No Description!
Coordinates
chr7B:+:366040330..366053454
Molecular Weight (calculated)
70229.5 Da
IEP (calculated)
7.056
GRAVY (calculated)
-1.168
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRPYPPPQ GAFPPQARPV NPYGQPPPPQ AGYGQMPPPP FHAPPPPGPP PPHQPQYNFG HAPPQQQQQP PPPPPQMYYQ PPPPPYGGNN NQAPPPPPPM
101: SPPPSAPPPP PAQPPPRVAL PPPKEQQAKA ALPRVETEEE RRARKKREYE KQKAEDRKQQ QMMRQSQATI LQKTQQVRAA QQQQQPQPQS RHLQPSGGTR
201: VATTVSRPAS AANTERFENR LKKPTTFLCK HKFRNELPDP SAQLKWLPLN KDKDRYTKYR ISSLEKNYLP KMIVPEDLGI PLDLLDMTVY NPPAAQLPLA
301: PEDEELLRDD EVLTPVKPEG IRKKERPTDK GMSWLVKTQY ISPLSTDAAK MSITEKQAKE RRESREGRDN VLENLNDRQK RIKAIAESFK AAKSRPVHQT
401: KRGMEPEFVL PLVPDFDRYN DPFVMVNFDG DPTADSEQYN KLERSVRDEC ESQALMKSFQ VSGSDPAKQE KFLAYMAPSP HELVKDLDDE NEDFQYSWIR
501: EYHWEVRGDD KQDPTTYLVS FDDDDAKYLP LPTKLVLQKK KAKEGRSGDE IEHFPVPSRI IVSRTAHGDE MEHGESSSMH GNLKRQRSSV DDDLDEHPRH
601: SRVEDMGQYS EEDYSD
101: SPPPSAPPPP PAQPPPRVAL PPPKEQQAKA ALPRVETEEE RRARKKREYE KQKAEDRKQQ QMMRQSQATI LQKTQQVRAA QQQQQPQPQS RHLQPSGGTR
201: VATTVSRPAS AANTERFENR LKKPTTFLCK HKFRNELPDP SAQLKWLPLN KDKDRYTKYR ISSLEKNYLP KMIVPEDLGI PLDLLDMTVY NPPAAQLPLA
301: PEDEELLRDD EVLTPVKPEG IRKKERPTDK GMSWLVKTQY ISPLSTDAAK MSITEKQAKE RRESREGRDN VLENLNDRQK RIKAIAESFK AAKSRPVHQT
401: KRGMEPEFVL PLVPDFDRYN DPFVMVNFDG DPTADSEQYN KLERSVRDEC ESQALMKSFQ VSGSDPAKQE KFLAYMAPSP HELVKDLDDE NEDFQYSWIR
501: EYHWEVRGDD KQDPTTYLVS FDDDDAKYLP LPTKLVLQKK KAKEGRSGDE IEHFPVPSRI IVSRTAHGDE MEHGESSSMH GNLKRQRSSV DDDLDEHPRH
601: SRVEDMGQYS EEDYSD
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.