Factsheet for Os08t0157100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G002000.1	Wheat	nucleus	63.86	83.0
TraesCS7A01G299200.1	Wheat	nucleus	85.37	71.3
TraesCS7B01G200900.2	Wheat	nucleus	85.81	62.82
TraesCS7D01G026600.2	Wheat	nucleus, plastid	85.37	62.1
HORVU3Hr1G001430.1	Barley	nucleus	84.7	60.92
TraesCS3B01G012200.1	Wheat	nucleus	84.48	60.38
KXG24466	Sorghum	nucleus	84.92	59.84
TraesCS3A01G009400.2	Wheat	nucleus	82.93	57.89
Zm00001d049548_P004	Maize	nucleus, plastid	84.92	53.05
Zm00001d024567_P004	Maize	nucleus	80.04	47.13
AT1G79730.1	Thale cress	nucleus	54.99	42.11
KRH47209	Soybean	nucleus	59.65	40.82
Bra009582.1-P	Field mustard	nucleus	52.11	40.8
CDY40363	Canola	nucleus	51.88	40.55
KRH44275	Soybean	nucleus	59.87	40.54
CDY10443	Canola	nucleus	51.66	40.31
Solyc03g121020.2.1	Tomato	nucleus	58.54	37.82
VIT_09s0002g03510.t01	Wine grape	nucleus	58.54	37.61
GSMUA_Achr3P00330_001	Banana	nucleus	65.41	23.94

Protein Annotations

MapMan:15.3.6.1.1	ProteinID:BAC99509.1	ProteinID:BAF22943.1	ProteinID:BAT03901.1	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006368
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043	GO:GO:0016570	GO:GO:0016571
GO:GO:0016593	GO:GO:0019538	EnsemblPlantsGene:Os08g0157100	EnsemblPlants:Os08t0157100-01	PFAM:PF03985	PANTHER:PTHR23188
UniProt:Q6ZD92	InterPro:RNA_pol_II-assoc_Paf1	UniParc:UPI00001D8D2C	SEG:seg	:	:

Description

RNA polymerase II-associated, Paf1 domain containing protein. (Os08t0157100-01)

Coordinates

chr8:-:3313246..3318036

Molecular Weight (calculated)

52162.1 Da

IEP (calculated)

5.989

GRAVY (calculated)

-1.059

Length

451 amino acids

Sequence
(BLAST)

001: MMRQSQATVL QKTQQVRAAQ QPQSRHHQQP SGGSRPAVTA TRPAAAPNAE RFENRLKKPT TFLCKHKFRN ELPDPSSQLK WLPLNKDKDR YTKYRITSLE
101: KNYIPKMIVP EDLGIPLDLL DMSVYNTPPV QPPMAPEDEE LLRDDEVLTP VKKDGIRKKE RPTDKGMSWL VKTQYISPLS TDAAKMSITE KQAKERRESR
201: EGRNTFLENI NDREKQIKAI EDSFRAAKSR PVHQTKRGME AEWVLPLLPD FDRYDDQFVM VNFDGDPTAD SEQYNKLERS ERDECESRAV MKSFLVNGSD
301: PAKQEKFLAY MVPSPHELSK DLDDETEDIQ YSWLREYHWE VRGDDKDDPT TYLVTFDDDG AKYLPLPTKL VLQKKKAKEG RSGDEIEHFP VPSRITVSRT
401: AHGGMMEHGE SSSMHENLKR QRSSVDDDLY DHPKHSRVED MDQYSGDEYS D

Best Arabidopsis Sequence Match ( AT1G79730.1 )
(BLAST)

001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE

Arabidopsis Description

VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.