Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G002000.1 | Wheat | nucleus | 52.63 | 95.1 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 87.4 | 86.85 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 87.4 | 84.83 |
| Os08t0157100-01 | Rice | mitochondrion | 60.92 | 84.7 |
| KXG24466 | Sorghum | nucleus | 75.12 | 73.59 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 74.8 | 64.96 |
| Zm00001d024567_P004 | Maize | nucleus | 70.33 | 57.57 |
| AT1G79730.1 | Thale cress | nucleus | 47.21 | 50.25 |
| Bra009582.1-P | Field mustard | nucleus | 44.82 | 48.78 |
| CDY10443 | Canola | nucleus | 44.66 | 48.44 |
| CDY40363 | Canola | nucleus | 44.5 | 48.35 |
| KRH44275 | Soybean | nucleus | 50.88 | 47.9 |
| KRH47209 | Soybean | nucleus | 50.24 | 47.8 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 51.67 | 46.15 |
| Solyc03g121020.2.1 | Tomato | nucleus | 50.88 | 45.7 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 50.4 | 25.65 |
Protein Annotations
| MapMan:15.3.6.1.1 | EMBL:AK363493 | EMBL:AK370031 | UniProt:F2DHX5 | GO:GO:0000003 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 |
| GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016571 |
| GO:GO:0016593 | GO:GO:0019538 | EnsemblPlantsGene:HORVU3Hr1G001430 | EnsemblPlants:HORVU3Hr1G001430.1 | PFAM:PF03985 | PANTHER:PTHR23188 |
| InterPro:RNA_pol_II-assoc_Paf1 | UniParc:UPI000200641F | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DHX5]
Coordinates
chrchr3H:+:3242648..3407139
Molecular Weight (calculated)
71596.0 Da
IEP (calculated)
7.865
GRAVY (calculated)
-1.231
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRPYPPAP GQGPFPPQGP PINPYGQPPP PQQQAGYGHM PPPPFHAPPP PPPPGPPPPH QPQYNFGHAP PQHQQQQRPP PPHQMYYQPP PPQYGGSSNQ
101: AAPPPPPVAP PPSAPPPPPP AQPQPTPREA PPQPKERQAK AALPRVETED ERRSRKKREY EKQKLDDRKQ QQMMRQSQAT ILQKTQKVRA AAQQQQQPQP
201: QSRHPQPSGG TRVATTAPRP ASAANTERFE NRLKKPTTFL CKHKFRNELP DPSAQLKWLP LNKDKDRYTK YRVTSLEKNY MPKMIVPEDL GIPLDLLDMS
301: VYNPPSVQRP LAPEDQELLR DDEVLTPVKP EGIRKKERPT DKGMSWLVKT QYISPLTTDA AKMSITEKQA KERRESREGR DNVLENLNDR QKRIKAIAES
401: FKAAKSRPVH QTKRGMEPEF VLPLVPDFDR YNDPFVMVNF DGDPTADSEQ YTKLERSVRD ECESQALMKS FQVSGSDPAK QERFLAYMAP APHELVKDFD
501: DENEDFQYSW IREYHWEVRG DDKQDPTTYL VSFDDDDAKY LPLPTKLVLQ KKKAKEGRTG DEIEHFPVPS RINVSRTAHG DEMEHGESSS MHGNLKRQRS
601: SVDDDLDEHP RHSRVEDMDQ YSEEYSE
101: AAPPPPPVAP PPSAPPPPPP AQPQPTPREA PPQPKERQAK AALPRVETED ERRSRKKREY EKQKLDDRKQ QQMMRQSQAT ILQKTQKVRA AAQQQQQPQP
201: QSRHPQPSGG TRVATTAPRP ASAANTERFE NRLKKPTTFL CKHKFRNELP DPSAQLKWLP LNKDKDRYTK YRVTSLEKNY MPKMIVPEDL GIPLDLLDMS
301: VYNPPSVQRP LAPEDQELLR DDEVLTPVKP EGIRKKERPT DKGMSWLVKT QYISPLTTDA AKMSITEKQA KERRESREGR DNVLENLNDR QKRIKAIAES
401: FKAAKSRPVH QTKRGMEPEF VLPLVPDFDR YNDPFVMVNF DGDPTADSEQ YTKLERSVRD ECESQALMKS FQVSGSDPAK QERFLAYMAP APHELVKDFD
501: DENEDFQYSW IREYHWEVRG DDKQDPTTYL VSFDDDDAKY LPLPTKLVLQ KKKAKEGRTG DEIEHFPVPS RINVSRTAHG DEMEHGESSS MHGNLKRQRS
601: SVDDDLDEHP RHSRVEDMDQ YSEEYSE
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.