Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10443 | Canola | nucleus | 77.25 | 78.72 |
| CDY40363 | Canola | nucleus | 76.91 | 78.51 |
| Bra009582.1-P | Field mustard | nucleus | 76.57 | 78.3 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 33.11 | 56.2 |
| Os08t0157100-01 | Rice | mitochondrion | 42.11 | 54.99 |
| KRH47209 | Soybean | nucleus | 60.95 | 54.48 |
| KRH44275 | Soybean | nucleus | 60.27 | 53.3 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 61.29 | 51.42 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 46.86 | 51.11 |
| Solyc03g121020.2.1 | Tomato | nucleus | 58.4 | 49.28 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 51.1 | 48.86 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 50.76 | 48.23 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 50.25 | 47.21 |
| KXG24466 | Sorghum | nucleus | 51.27 | 47.19 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 50.42 | 47.07 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 51.1 | 46.59 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 51.27 | 41.83 |
| Zm00001d024567_P004 | Maize | nucleus | 49.41 | 37.99 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 48.22 | 23.05 |
Protein Annotations
| MapMan:15.3.6.1.1 | EntrezGene:844312 | ProteinID:AAF68118.1 | ProteinID:AAG52243.1 | ProteinID:AEE36292.1 | ArrayExpress:AT1G79730 |
| EnsemblPlantsGene:AT1G79730 | RefSeq:AT1G79730 | TAIR:AT1G79730 | RefSeq:AT1G79730-TAIR-G | EnsemblPlants:AT1G79730.1 | TAIR:AT1G79730.1 |
| EMBL:AY093780 | Unigene:At.44777 | EMBL:BT002711 | ncoils:Coil | Symbol:ELF7 | UniProt:F4HQA1 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006368 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009910 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016571 | GO:GO:0016593 |
| GO:GO:0019538 | RefSeq:NP_178091.2 | PFAM:PF03985 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01217 |
| PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 | UniParc:UPI0000163316 | SEG:seg | : | : |
Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
Coordinates
chr1:-:30000538..30004083
Molecular Weight (calculated)
67341.4 Da
IEP (calculated)
9.203
GRAVY (calculated)
-1.068
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.