CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0157100-01	Rice	mitochondrion	59.84	84.92
Zm00001d049548_P004	Maize	nucleus, plastid	90.78	80.47
TraesCS3D01G002000.1	Wheat	nucleus	43.44	80.12
TraesCS7A01G299200.1	Wheat	nucleus	67.34	79.81
TraesCS7B01G200900.2	Wheat	nucleus	75.0	77.92
TraesCS7D01G026600.2	Wheat	nucleus, plastid	75.31	77.74
TraesCS3B01G012200.1	Wheat	nucleus	74.84	75.91
HORVU3Hr1G001430.1	Barley	nucleus	73.59	75.12
TraesCS3A01G009400.2	Wheat	nucleus	74.53	73.84
Zm00001d024567_P004	Maize	nucleus	85.16	71.15
AT1G79730.1	Thale cress	nucleus	47.19	51.27
Bra009582.1-P	Field mustard	nucleus	45.31	50.35
CDY40363	Canola	nucleus	45.16	50.09
CDY10443	Canola	nucleus	44.69	49.48
KRH44275	Soybean	nucleus	51.25	49.25
KRH47209	Soybean	nucleus	50.47	49.01
Solyc03g121020.2.1	Tomato	nucleus	51.72	47.42
VIT_09s0002g03510.t01	Wine grape	nucleus	51.09	46.58
GSMUA_Achr3P00330_001	Banana	nucleus	52.19	27.11

Protein Annotations

MapMan:15.3.6.1.1	EntrezGene:8069621	UniProt:C5YH07	ncoils:Coil	ProteinID:EES14574.1	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006368	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0016043	GO:GO:0016570
GO:GO:0016571	GO:GO:0016593	GO:GO:0019538	EnsemblPlants:KXG24466	ProteinID:KXG24466	ProteinID:KXG24466.1
PFAM:PF03985	PANTHER:PTHR23188	InterPro:RNA_pol_II-assoc_Paf1	EnsemblPlantsGene:SORBI_3007G046200	unigene:Sbi.5939	UniParc:UPI0001A87BE5
RefSeq:XP_002445079.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:4640694..4649122

Molecular Weight (calculated)

72419.1 Da

IEP (calculated)

8.190

GRAVY (calculated)

-1.171

Length

640 amino acids

Sequence
(BLAST)

001: MASYRPYAPP QQHPPPPPPQ GGYPPQMNPY APPPQQAPYN RMPAPPYHAG PPPPPPPGPP PPHQPQFNFG PGPPQQPPPP PQMYYQPPPP PYGGTSNPPP
101: PPPSVPPPPP SPPPAAPPPP PPPPAQPPSV QAPLPPKEQP PKATLPRVET EEERRARKKR EFEKQRVEDR KQQQMMRQTQ AAILQKTQQR AAQQQPQSRH
201: HHHQPPSGSR APATGSRAVV TGSRAVATGS RPASAPNAER FENRLKKPTT FLCKHKFRNE LPDPSAQLKW LPLNKDKDRY TKYRITSLEK NYIPKMIVPD
301: DLGIPLDLLD MSVYNPPDVQ PRMAPEDEEL LRDDEVLTPI KQEGIRKRER PTDQGVSWLV KTQYISPLST DAAKMSLTEK QAKERRESRE GRNAFLDNLN
401: DREKQIKAIE ESFKAAKSRP VHQTKRGMQA EWVMPLLPDF DRYEEPFVMV NFDGDPTADS EQYNKLERSV RDECESRAVM KSFSVSGSDP TKQEKFLAYM
501: APAPHELTRD LDDDDDIQYS WLREYHWDVR GDDKDDPTTY LVTFDKEEGA KYLPLPTKLV LQKKKAKEGR SGDEIEHFPV PSRITVSKTA HGGTMERGES
601: SGLHVNSKPR RSHVDDDLDE HPKRSRVEDI DQYSGEEYSE

Best Arabidopsis Sequence Match ( AT1G79730.1 )
(BLAST)

001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE

Arabidopsis Description

VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.