Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24466 | Sorghum | nucleus | 71.15 | 85.16 |
| Os08t0157100-01 | Rice | mitochondrion | 47.13 | 80.04 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 53.39 | 75.74 |
| TraesCS3D01G002000.1 | Wheat | nucleus | 33.68 | 74.35 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 69.71 | 73.96 |
| TraesCS7B01G200900.2 | Wheat | nucleus | 58.75 | 73.05 |
| TraesCS7D01G026600.2 | Wheat | nucleus, plastid | 59.01 | 72.9 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 58.09 | 70.52 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 57.57 | 70.33 |
| TraesCS3A01G009400.2 | Wheat | nucleus | 57.96 | 68.73 |
| AT1G79730.1 | Thale cress | nucleus | 37.99 | 49.41 |
| CDY40363 | Canola | nucleus | 36.68 | 48.7 |
| Bra009582.1-P | Field mustard | nucleus | 36.55 | 48.61 |
| KRH44275 | Soybean | nucleus | 42.04 | 48.35 |
| KRH47209 | Soybean | nucleus | 41.38 | 48.1 |
| CDY10443 | Canola | nucleus | 36.16 | 47.92 |
| Solyc03g121020.2.1 | Tomato | nucleus | 41.64 | 45.7 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 41.64 | 45.44 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 41.25 | 25.65 |
Protein Annotations
| EntrezGene:100273854 | MapMan:15.3.6.1.1 | UniProt:A0A1D6J073 | ProteinID:AQK41497.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 | PFAM:PF03985 | PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 |
| UniParc:UPI0008456192 | EnsemblPlantsGene:Zm00001d024567 | EnsemblPlants:Zm00001d024567_P004 | EnsemblPlants:Zm00001d024567_T004 | SEG:seg | : |
Description
Protein PAF1 homolog
Coordinates
chr10:+:78539229..78549001
Molecular Weight (calculated)
86527.7 Da
IEP (calculated)
9.431
GRAVY (calculated)
-0.834
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRPYAPP PPQGSYPPQM NPYAPPQAPY NRMPAPPYHA GPPPPPPPGP PPPHQPQFNF GPGPPQQHPP PPMYYQPPPP PYGGNSNPPP PPPSAPPPPP
101: SPPPAAPPPP PPAQAPSAQA LLPSKEQQPK ATLPREETEE ERRARKKREF EKQRVEERKQ QQMMRQTQAT ILQKTQQVRA SQQQPQSRHH HHQPPSIFRA
201: AAIGSRAVAT GSRPASAPNA ERFENRLKKP TTFLCKHKFR NELPDPSAQL KWLPLNKDKD RYTKYRITSL EKNYIPKMIV PEDLGIPLDL LDMSVYNPRD
301: VQSRMAPEDE ELLRDDEVLT PIKQEGTRKR ERPTDKGVSW LVKTQYISPL STDATKMSLT EKQAKERRET REGRNAFLDN LNDREKQIKA IEESFRAAKS
401: RPVHQTKRGM QAEWVMPLLP DFDRYEEPFV MVNFDGDPTA DSEQYNKLER PVRDECESRA VMKSFSVSGS DPSKQEKFLA YMAPAPHELA RDLDDENDDI
501: QYSWLREYHW EVRGDDKDDP TTYLVTFDKE EGAKYLPLPT KLVLQKKKAK EGRSGDEIEH FPVPSLITVN KTGHVGTMER GESSGMHVWV IMKHSVVRWP
601: LSCNSIPAQS DNDMMTFGLP GGPFSAGSQV WLSFMDAKIW FPSSDSIVLW GTVPIAGTNS GKVTWGSLVT ISPKMQPTDH MSMAWVYSEQ LSRSSGALYH
701: RVTTYSIMKS VSVVVLASPK SPIFRSHLAF SSMLLGLRSL CRTFAECTYL SPRSSWYTKY CTGRSS
101: SPPPAAPPPP PPAQAPSAQA LLPSKEQQPK ATLPREETEE ERRARKKREF EKQRVEERKQ QQMMRQTQAT ILQKTQQVRA SQQQPQSRHH HHQPPSIFRA
201: AAIGSRAVAT GSRPASAPNA ERFENRLKKP TTFLCKHKFR NELPDPSAQL KWLPLNKDKD RYTKYRITSL EKNYIPKMIV PEDLGIPLDL LDMSVYNPRD
301: VQSRMAPEDE ELLRDDEVLT PIKQEGTRKR ERPTDKGVSW LVKTQYISPL STDATKMSLT EKQAKERRET REGRNAFLDN LNDREKQIKA IEESFRAAKS
401: RPVHQTKRGM QAEWVMPLLP DFDRYEEPFV MVNFDGDPTA DSEQYNKLER PVRDECESRA VMKSFSVSGS DPSKQEKFLA YMAPAPHELA RDLDDENDDI
501: QYSWLREYHW EVRGDDKDDP TTYLVTFDKE EGAKYLPLPT KLVLQKKKAK EGRSGDEIEH FPVPSLITVN KTGHVGTMER GESSGMHVWV IMKHSVVRWP
601: LSCNSIPAQS DNDMMTFGLP GGPFSAGSQV WLSFMDAKIW FPSSDSIVLW GTVPIAGTNS GKVTWGSLVT ISPKMQPTDH MSMAWVYSEQ LSRSSGALYH
701: RVTTYSIMKS VSVVVLASPK SPIFRSHLAF SSMLLGLRSL CRTFAECTYL SPRSSWYTKY CTGRSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.