Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G002000.1 | Wheat | nucleus | 52.79 | 98.27 |
| TraesCS3B01G012200.1 | Wheat | nucleus | 89.63 | 91.76 |
| TraesCS7A01G299200.1 | Wheat | nucleus | 74.61 | 89.26 |
| HORVU3Hr1G001430.1 | Barley | nucleus | 84.83 | 87.4 |
| Os08t0157100-01 | Rice | mitochondrion | 57.89 | 82.93 |
| KXG24466 | Sorghum | nucleus | 73.84 | 74.53 |
| Zm00001d049548_P004 | Maize | nucleus, plastid | 73.53 | 65.79 |
| Zm00001d024567_P004 | Maize | nucleus | 68.73 | 57.96 |
| AT1G79730.1 | Thale cress | nucleus | 46.59 | 51.1 |
| CDY40363 | Canola | nucleus | 44.43 | 49.74 |
| Bra009582.1-P | Field mustard | nucleus | 43.96 | 49.31 |
| CDY10443 | Canola | nucleus | 43.96 | 49.13 |
| KRH44275 | Soybean | nucleus | 50.31 | 48.8 |
| KRH47209 | Soybean | nucleus | 49.69 | 48.71 |
| Solyc03g121020.2.1 | Tomato | nucleus | 50.0 | 46.28 |
| VIT_09s0002g03510.t01 | Wine grape | nucleus | 50.15 | 46.15 |
| GSMUA_Achr3P00330_001 | Banana | nucleus | 49.69 | 26.06 |
Protein Annotations
| MapMan:15.3.6.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006368 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016570 | GO:GO:0016593 | GO:GO:0019538 |
| PFAM:PF03985 | PANTHER:PTHR23188 | InterPro:RNA_pol_II-assoc_Paf1 | EnsemblPlantsGene:TraesCS3A01G009400 | EnsemblPlants:TraesCS3A01G009400.2 | SEG:seg |
Description
No Description!
Coordinates
chr3A:+:8588220..8593508
Molecular Weight (calculated)
73661.3 Da
IEP (calculated)
7.851
GRAVY (calculated)
-1.264
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRPYPPPQ GPFPPQAPPV NPYGQPPPPQ QQQAGYGHTP PPPPFHAPQQ QQAGYGHTPP PPPFHAPPPP PPPGPPPPHQ PQYFGHAPQQ QQQQQRPPPP
101: QMYYQPPPPP YGGNSNQAPP PPPPPVSAPP SAPPPPPAQP QPPPREAPPP PPKERQAKAA LPRVESEEER RARKKREYEK QKLEDRKQQQ MMRQSQATIL
201: QKTQKVRAAA QQQQPQPQQQ SRHLQPSGGA RPATTASRPT AAANTERFEN RLKKPTTFLC KHKFRNELPD PSAQLKWLPL NKDKDRYTKY RITSLEKNYM
301: PKMIVPEDLG IPLDLLDMSV YNPPSVHRPL APEDQELLRE DEVLTPVKPE GIRKKERPTD KGMSWLVKTQ YISPLTTDAA KMSLTEKQAK ERRESREGRD
401: NVLENLNDRQ KRIKAIAESF KAAKSRPVHQ TKRGMEPEFV LPLVPDFDRY NDPFVMVNFD GDPTADSEQY TKLERPVRDE CESQALMKSF QVSGSDPAKQ
501: ERFLAYMAPA PHELAKDLDD ENEDFQYSWI REYHWEVRGD DKQDPTTYLV SFDDDEAKYL PLPTKLVLQK KKAKEGRSGD EIEHFPVPSR ITVSRTSHDD
601: EMEQGESSSM HGNLKRRRSS VDDDLDEHPR RSRVEDPEQY SEDDSE
101: QMYYQPPPPP YGGNSNQAPP PPPPPVSAPP SAPPPPPAQP QPPPREAPPP PPKERQAKAA LPRVESEEER RARKKREYEK QKLEDRKQQQ MMRQSQATIL
201: QKTQKVRAAA QQQQPQPQQQ SRHLQPSGGA RPATTASRPT AAANTERFEN RLKKPTTFLC KHKFRNELPD PSAQLKWLPL NKDKDRYTKY RITSLEKNYM
301: PKMIVPEDLG IPLDLLDMSV YNPPSVHRPL APEDQELLRE DEVLTPVKPE GIRKKERPTD KGMSWLVKTQ YISPLTTDAA KMSLTEKQAK ERRESREGRD
401: NVLENLNDRQ KRIKAIAESF KAAKSRPVHQ TKRGMEPEFV LPLVPDFDRY NDPFVMVNFD GDPTADSEQY TKLERPVRDE CESQALMKSF QVSGSDPAKQ
501: ERFLAYMAPA PHELAKDLDD ENEDFQYSWI REYHWEVRGD DKQDPTTYLV SFDDDEAKYL PLPTKLVLQK KKAKEGRSGD EIEHFPVPSR ITVSRTSHDD
601: EMEQGESSSM HGNLKRRRSS VDDDLDEHPR RSRVEDPEQY SEDDSE
001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE
Arabidopsis Description
VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.