CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79730.1	CDX70521	AT5G13810.1	21798944
AT1G79730.1	CDX78539	AT5G13810.1	21798944
AT1G79730.1	CDY67732	AT5G13810.1	21798944
AT1G79730.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009582.1-P	Field mustard	nucleus	93.25	93.58
CDY40363	Canola	nucleus	93.25	93.41
AT1G79730.1	Thale cress	nucleus	78.72	77.25
TraesCS3D01G002000.1	Wheat	nucleus	31.83	53.03
Os08t0157100-01	Rice	mitochondrion	40.31	51.66
KRH47209	Soybean	nucleus	58.3	51.14
KRH44275	Soybean	nucleus	57.27	49.7
VIT_09s0002g03510.t01	Wine grape	nucleus	59.86	49.29
TraesCS7A01G299200.1	Wheat	nucleus	44.46	47.59
Solyc03g121020.2.1	Tomato	nucleus	56.4	46.7
TraesCS7B01G200900.2	Wheat	nucleus	48.44	45.45
TraesCS7D01G026600.2	Wheat	nucleus, plastid	48.27	45.0
KXG24466	Sorghum	nucleus	49.48	44.69
HORVU3Hr1G001430.1	Barley	nucleus	48.44	44.66
TraesCS3B01G012200.1	Wheat	nucleus	48.44	44.37
TraesCS3A01G009400.2	Wheat	nucleus	49.13	43.96
Zm00001d049548_P004	Maize	nucleus, plastid	49.83	39.89
Zm00001d024567_P004	Maize	nucleus	47.92	36.16
GSMUA_Achr3P00330_001	Banana	nucleus	47.58	22.32

Protein Annotations

MapMan:15.3.6.1.1	GO:A0A078FEA3	UniProt:A0A078FEA3	EnsemblPlants:CDY10443	ProteinID:CDY10443	ProteinID:CDY10443.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006368	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016570	GO:GO:0016593	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00032366001
PFAM:PF03985	PANTHER:PTHR23188	InterPro:RNA_pol_II-assoc_Paf1	UniParc:UPI0004EEF897	SEG:seg	:

Description

BnaCnng03440DBnaCnng03440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEA3]

Coordinates

chrLK032003:+:520950..523989

Molecular Weight (calculated)

66384.1 Da

IEP (calculated)

9.219

GRAVY (calculated)

-1.156

Length

578 amino acids

Sequence
(BLAST)

001: MASYRPPPPP SPLPPPPQNP PPPPPLPPSL PPPVPPPPPS HQPYAYPPHT YYQQPSHYPP PQFNQLQAPP PPPPPSAPPP TVPDPPRNQA ANDRHKAASK
101: PPRERPPSKQ HHRPHHHPHS KNPEEERRQR KKREAEKEKE RQQMKSSSHK SQVPKGHTEE RKPTPLLTAD RVENRLKKPT TFICKLKFRN ELPDPTAQLK
201: LMTIKRDKDQ YTKYTITSLE KLWKPKIFAE PDLGIPLDLL DLSVYKPPKV RQPLAPEDEE LLRDDDAVTP IKKEGIKRKE RPTDKGVSWL VKTQYISSIN
301: NESTRQSLTE KRAKELREMK GGVDILQNLN NRERQIKDIE ASFEACKSRP VHATNKKLQP VEVLPLLPYF DRYEEQFVVA NFDSAPTADS EFFGKLDSSI
401: RDEHESRAIL KSYVIAGSDN SNPEKILAYM VPSLDELSKD MHDENEDISY TWVREYLWDI PPKEPNERDT YLVSFEDGTA SYLPLPTRLN MRKRRAREGR
501: AFDEIEHLPV PSRVTVRNRS SVSIIEHKDS MVNSNSRNGA SSSKMRRLED EEGLGRSWKH GSEQDANQYS DNNDDYSE

Best Arabidopsis Sequence Match ( AT1G79730.1 )
(BLAST)

001: MASYRPPYPP LPQPPSQNSL APPPPPPSLP PPVPPPPPSH QPYSYPPPPP PPPHAYYQQG PHYPQFNQLQ APPPPPPPSA PPPLVPDPPR HQGPNDHEKG
101: ASKQVGRRER AKPDPSKHHH RSHLPHSKKI ETEEERRLRK KRELEKQRQD EKHRQQMKNS HKSQMPKGHT EEKKPTPLLT TDRVENRLKK PTTFICKLKF
201: RNELPDPSAQ LKLMTIKRDK DQFTKYTITS LEKLWKPKIF VEPDLGIPLD LLDLSVYNPP KVKAPLAPED EELLRDDDAV TPIKKDGIRR KERPTDKGMS
301: WLVKTQYISS INNESARQSL TEKQAKELRE MKGGINILHN LNNRERQIKD IEASFEACKS RPVHATNKNL QPVEVLPLLP YFDRYDEQFV VANFDGAPIA
401: DSEFFGKLDP SIRDAHESRA ILKSYVVAGS DTANPEKFLA YMVPSLDELS KDIHDENEEI SYTWVREYLW DVQPNANDPG TYLVSFDNGT ASYLPLPMRL
501: NLRKKRAREG RSSDEIEHFP VPSRVTVRRR STVSVIEHKD SGVYSSRVGA SSSKMRRLED EGGLGRSWKH EPEQDANQYS DGNEDDYSE

Arabidopsis Description

VIP2Protein PAF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4HQA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.