Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29400.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT4G29400.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g02630.t01 | Wine grape | cytosol | 70.74 | 81.41 |
| PGSC0003DMT400074006 | Potato | cytosol, mitochondrion | 94.76 | 72.82 |
| CDY43498 | Canola | plastid | 71.18 | 55.07 |
| Bra011105.1-P | Field mustard | plastid | 70.74 | 54.73 |
| CDY06810 | Canola | plastid | 69.87 | 53.69 |
| GSMUA_Achr8P24980_001 | Banana | plastid | 75.98 | 53.37 |
| AT4G29400.1 | Thale cress | plastid | 69.87 | 52.98 |
| Os01t0558800-01 | Rice | plastid | 64.19 | 52.31 |
| TraesCS3D01G206900.1 | Wheat | plastid | 61.14 | 50.72 |
| Zm00001d011166_P001 | Maize | plastid | 63.32 | 50.17 |
| KRH37622 | Soybean | nucleus | 70.31 | 50.0 |
| EES06656 | Sorghum | plastid | 63.32 | 49.49 |
| KRH44778 | Soybean | plastid | 67.69 | 49.36 |
| TraesCSU01G050100.1 | Wheat | plastid | 47.6 | 48.66 |
| HORVU3Hr1G048210.5 | Barley | plastid | 46.72 | 37.68 |
| Solyc08g081080.2.1 | Tomato | cytosol | 37.99 | 31.41 |
Protein Annotations
| EnsemblPlants:Solyc10g045310.1.1 | EnsemblPlantsGene:Solyc10g045310.1 | InterPro:DUF3531 | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF2 | PFAM:PF12049 |
| SEG:seg | UniParc:UPI000276B3F4 | UniProt:K4CZP9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr10:-:32667186..32669430
Molecular Weight (calculated)
25920.2 Da
IEP (calculated)
4.318
GRAVY (calculated)
-0.571
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTTDFLTL FEEEENNNDA DGVGGREDDE KNYDKDPELA DILGTCLDDP DKAKSRLEER LRKKRNKIVH TKTGSPTPMT VEFNKFDYSN TFIWFEFYNA
101: PLEKDISLIC DTIRSWHIVG RLGGCNSMNM QLSQSPLDKR PNYDAVQGAN VTPTTFYNIG DVEIQDNVAR IWVDIGTSEP LLLDVLINAL SQISSDYVGI
201: KQVVFGGSEF ENWKENMTSE DAGYSVHKI
101: PLEKDISLIC DTIRSWHIVG RLGGCNSMNM QLSQSPLDKR PNYDAVQGAN VTPTTFYNIG DVEIQDNVAR IWVDIGTSEP LLLDVLINAL SQISSDYVGI
201: KQVVFGGSEF ENWKENMTSE DAGYSVHKI
001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI
Arabidopsis Description
Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.