CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011166_P001	Maize	plastid	73.72	74.74
VIT_11s0016g02630.t01	Wine grape	cytosol	48.46	71.36
Os01t0558800-01	Rice	plastid	67.92	70.82
TraesCS3D01G206900.1	Wheat	plastid	62.12	65.94
TraesCSU01G050100.1	Wheat	plastid	49.83	65.18
Solyc10g045310.1.1	Tomato	nucleus	49.49	63.32
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	51.54	50.67
HORVU3Hr1G048210.5	Barley	plastid	48.81	50.35
OQU85906	Sorghum	cytosol	8.19	48.98
GSMUA_Achr8P24980_001	Banana	plastid	53.92	48.47
Bra011105.1-P	Field mustard	plastid	47.44	46.96
CDY43498	Canola	plastid	47.44	46.96
KRH44778	Soybean	plastid	50.17	46.82
AT4G29400.1	Thale cress	plastid	47.78	46.36
CDY06810	Canola	plastid	46.76	45.97
KRH37622	Soybean	nucleus	50.17	45.65
EES07795	Sorghum	plastid	34.47	35.31

Protein Annotations

EnsemblPlants:EES06656	EnsemblPlantsGene:SORBI_3004G123300	EntrezGene:8059097	InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF2
PFAM:PF12049	ProteinID:EES06656	ProteinID:EES06656.1	RefSeq:XP_002453680.1	SEG:seg	unigene:Sbi.6477
UniParc:UPI0001A85F30	UniProt:C5Y000	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:13875584..13879008

Molecular Weight (calculated)

32358.1 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.347

Length

293 amino acids

Sequence
(BLAST)

001: MLSALLGGYL TAYPPPPLPP ATAAAPSPSA RLPAPFPARL RHASLHVARR RAAGAGEALS ASTASEGDDE YEAAAALQEE GFPSWTGGGE EEEEDYDHDP
101: EIGDIMGDYF DDPKKAQTRM EDRIRKKRHK IVQTKTGSPN PMKVVFNKFD FSNSYIWFEF YNALLPKDVT LISDSLRSWH IVGRLGGCNS MNMQLSQLPL
201: DCKRPTYDAL EGANVTPTSF YNIGDLEIQD NLARVWVDIG IHEPLLLDIL LNALTTISSD HVGIKQVQFG GLEFLNWSED LKTEEVGYSV CKI

Best Arabidopsis Sequence Match ( AT4G29400.1 )
(BLAST)

001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI

Arabidopsis Description

Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.