CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011105.1-P	Field mustard	plastid	98.65	98.65
CDY06810	Canola	plastid	86.15	85.57
VIT_11s0016g02630.t01	Wine grape	cytosol	51.69	76.88
AT4G29400.1	Thale cress	plastid	73.99	72.52
Solyc10g045310.1.1	Tomato	nucleus	55.07	71.18
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	56.42	56.04
GSMUA_Achr8P24980_001	Banana	plastid	55.74	50.61
Zm00001d011166_P001	Maize	plastid	48.99	50.17
Os01t0558800-01	Rice	plastid	47.3	49.82
KRH44778	Soybean	plastid	52.7	49.68
KRH37622	Soybean	nucleus	52.03	47.83
TraesCS3D01G206900.1	Wheat	plastid	44.26	47.46
EES06656	Sorghum	plastid	46.96	47.44
TraesCSU01G050100.1	Wheat	plastid	34.46	45.54
CDY44774	Canola	cytosol	13.51	43.01
HORVU3Hr1G048210.5	Barley	plastid	36.15	37.68
CDY40748	Canola	plastid	29.39	29.69
CDX81102	Canola	endoplasmic reticulum, vacuole	29.39	29.19
CDY60226	Canola	cytosol	30.74	27.41

Protein Annotations

EnsemblPlants:CDY43498	EnsemblPlantsGene:GSBRNA2T00076781001	InterPro:DUF3531	ncoils:Coil	PANTHER:PTHR33102	PANTHER:PTHR33102:SF2
PFAM:PF12049	ProteinID:CDY43498	ProteinID:CDY43498.1	SEG:seg	UniParc:UPI0004EDBB4D	UniProt:A0A078I315
MapMan:35.2	:	:	:	:	:

Description

BnaA01g07460DBnaA01g07460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I315]

Coordinates

chrLK032560:+:23787..25453

Molecular Weight (calculated)

34226.3 Da

IEP (calculated)

5.302

GRAVY (calculated)

-0.667

Length

296 amino acids

Sequence
(BLAST)

001: MLSFQCSLHL LQPYCSASYN NHSNLRFHNL APFRVTSTIQ VPKIQRVRTD WSRRSVKVRV NGLNREMEEE EEDVEESEEE EEFTSRKRES YGGKKEDINY
101: DKDPEFADIL GDCLDNPEKA QKKMEERLRK KRNKILHTKT GSATSMQVTF NKFEYSNSYM WLEFHNAPLD KDIALITDAI RSWHILGRLG GYNSMNMQLS
201: QAPVDKRPNY DAILGANIEP TTFYNIGDLE VQDNVARIWL DIGTSEPLIL DVLINALTQI SSDYVGIKKV VFGGSEFENW KENLTSEESG FRVHKI

Best Arabidopsis Sequence Match ( AT4G29400.1 )
(BLAST)

001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI

Arabidopsis Description

Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.