CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44774	Canola	cytosol	31.4	98.92
Bra028658.1-P	Field mustard	plastid	88.4	86.33
CDX81102	Canola	endoplasmic reticulum, vacuole	86.01	84.56
OQU85906	Sorghum	cytosol	13.31	79.59
AT5G08400.1	Thale cress	plastid	84.64	74.47
Solyc08g081080.2.1	Tomato	cytosol	69.28	73.29
CDY60226	Canola	cytosol	81.57	71.99
VIT_10s0071g01140.t01	Wine grape	nucleus	72.7	71.72
PGSC0003DMT400031818	Potato	plastid	70.65	67.65
KRG93163	Soybean	nucleus	67.58	65.78
KRH64843	Soybean	nucleus	67.92	65.46
Zm00001d051851_P005	Maize	plastid	59.73	62.95
GSMUA_Achr3P00100_001	Banana	plastid	67.58	62.46
EES07795	Sorghum	plastid	60.75	62.24
Os02t0827600-01	Rice	mitochondrion	56.31	59.78
TraesCS6A01G371300.1	Wheat	plastid	57.0	59.43
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	56.66	59.07
TraesCS6D01G355200.1	Wheat	plastid	57.34	58.13
HORVU6Hr1G087420.4	Barley	plastid	56.66	56.46
CDY06810	Canola	plastid	31.4	30.87
CDY43498	Canola	plastid	29.69	29.39

Protein Annotations

EnsemblPlants:CDY40748	EnsemblPlantsGene:GSBRNA2T00071645001	InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF13	PFAM:PF12049
ProteinID:CDY40748	ProteinID:CDY40748.1	SEG:seg	UniParc:UPI0004EEC740	UniProt:A0A078HVE6	MapMan:35.2

Description

BnaAnng06110DBnaAnng06110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVE6]

Coordinates

chrLK032478:+:106906..108850

Molecular Weight (calculated)

33317.6 Da

IEP (calculated)

8.175

GRAVY (calculated)

-0.442

Length

293 amino acids

Sequence
(BLAST)

001: MYKTHLLSLS SCTLNLNLPL SPSILVPQRQ PLSLHKRNLP SLFSVSATSD NISADKKGSG TTARGRRLLK VREEKRKRDY DRLHDYPSWA KVLESACKDD
101: EELRAVLGDS IGNPELMRKK VEERVRKKGK DFQKQKSGSV LSFKVSFRDF NPVDSFIWFE LYGPPSDRDV DLIGSVIQAW YVMGRLGAFN TSNLQLANSS
201: MEYDPLYDAE KGFKVMPSSF HDISDVEFQD NWGRVWVDLG TSDIFALDVL LNSLTVVSSE YLGIQQVVFG GKRMGDWEEG MTNPDFGYKY FKI

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.