CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
plasma membrane 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44774	Canola	cytosol	26.25	84.95
KRH64843	Soybean	nucleus	83.72	82.89
OQU85906	Sorghum	cytosol	11.96	73.47
VIT_10s0071g01140.t01	Wine grape	nucleus	70.76	71.72
Solyc08g081080.2.1	Tomato	cytosol	65.12	70.76
CDX81102	Canola	endoplasmic reticulum, vacuole	67.11	67.79
CDY40748	Canola	plastid	65.78	67.58
Bra028658.1-P	Field mustard	plastid	66.45	66.67
PGSC0003DMT400031818	Potato	plastid	65.12	64.05
GSMUA_Achr3P00100_001	Banana	plastid	65.78	62.46
Zm00001d051851_P005	Maize	plastid	57.48	62.23
CDY60226	Canola	cytosol	67.44	61.14
Bra005991.1-P	Field mustard	cytosol	67.11	61.03
EES07795	Sorghum	plastid	57.81	60.84
AT5G08400.1	Thale cress	plastid	66.78	60.36
Os02t0827600-01	Rice	mitochondrion	55.15	60.14
TraesCS6A01G371300.1	Wheat	plastid	54.49	58.36
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	54.49	58.36
TraesCS6D01G355200.1	Wheat	plastid	54.82	57.09
HORVU6Hr1G087420.4	Barley	plastid	55.15	56.46
KRH44778	Soybean	plastid	30.9	29.62
KRH37622	Soybean	nucleus	31.56	29.5

Protein Annotations

EMBL:ACUP02011541	EnsemblPlants:KRG93163	EnsemblPlantsGene:GLYMA_19G000500	InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF13
PFAM:PF12049	ProteinID:KRG93163	ProteinID:KRG93163.1	UniParc:UPI000233F2CA	UniProt:I1N5N2	MapMan:35.2

Description

hypothetical protein

Coordinates

chr19:-:54977..59954

Molecular Weight (calculated)

34321.5 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.498

Length

301 amino acids

Sequence
(BLAST)

001: MAGMSGCSCR WQWAEAKSMG VGCWFPSSTT KRSFRPVIVS VSAISDNNSH SYTSSGRKLE EEGIKGSGTT ARDRRLLRIR QEKRQREYDL LNNYPAWAKV
101: LENACKDDAE LRAVLGDSIG NPELMRKRVE DRVRKKGRDF QKSKTGSVLA FKVTFRDFNP LDSYIWFELF GSPSDRDVNL IGNVIQSWYV MGRLGAFNSS
201: NLQLANSSVE YDPLYDADKG FKVMPSSFHD ISDIEFQENW GRVWVDLGTS DYFAIDVLLN CLTVLSSEYH GIQQIVFGGR RMGDWEEGMT SPEYGYKYFK
301: I

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.