CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 4
plasma membrane 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44774	Canola	cytosol	25.99	84.95
KRG93163	Soybean	nucleus	82.89	83.72
OQU85906	Sorghum	cytosol	11.84	73.47
VIT_10s0071g01140.t01	Wine grape	nucleus	71.05	72.73
Solyc08g081080.2.1	Tomato	cytosol	64.8	71.12
Bra028658.1-P	Field mustard	plastid	67.11	68.0
CDY40748	Canola	plastid	65.46	67.92
CDX81102	Canola	endoplasmic reticulum, vacuole	66.45	67.79
PGSC0003DMT400031818	Potato	plastid	64.14	63.73
GSMUA_Achr3P00100_001	Banana	plastid	66.45	63.72
Zm00001d051851_P005	Maize	plastid	56.91	62.23
EES07795	Sorghum	plastid	57.89	61.54
Bra005991.1-P	Field mustard	cytosol	66.45	61.03
Os02t0827600-01	Rice	mitochondrion	55.26	60.87
CDY60226	Canola	cytosol	66.45	60.84
AT5G08400.1	Thale cress	plastid	65.79	60.06
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	54.93	59.43
TraesCS6A01G371300.1	Wheat	plastid	54.28	58.72
HORVU6Hr1G087420.4	Barley	plastid	55.59	57.48
TraesCS6D01G355200.1	Wheat	plastid	54.61	57.44
KRH44778	Soybean	plastid	29.93	28.98
KRH37622	Soybean	nucleus	30.59	28.88

Protein Annotations

EMBL:ACUP02001297	EnsemblPlants:KRH64843	EnsemblPlantsGene:GLYMA_03G000100	EntrezGene:100779006	InterPro:DUF3531	PANTHER:PTHR33102
PANTHER:PTHR33102:SF13	PFAM:PF12049	ProteinID:KRH64843	ProteinID:KRH64843.1	SEG:seg	UniParc:UPI000233A1A0
UniProt:K7K0P8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:9547..29036

Molecular Weight (calculated)

34728.9 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.526

Length

304 amino acids

Sequence
(BLAST)

001: MAGMSGYSCC WQWAEVKSMG MGYWFPSSTT KRSFRPVLVS VSAISDDNSH SYTSSSSNGR KLEEEGIKGS GTTARDRRLL RIRQEKRQRE YDRLNNYPAW
101: AKVLENACKD DAELRAVLGD SIGNPELMRK RVEDRVRKKG RDFQKSKTGS VLAFKVTFRD FNPLDSYIWF ELFGSPSDRD VNLIGNVIQS WYVMGRLGAF
201: NSSNLQLANS SVEYDPLYDA DKGFKVMPSS FHDISDIEFQ ENWGRVWVDL GTSDYFAIDV LLNCLTALSS EYLGIQQIVF GGRRMGDWEE GMTSPEYGYK
301: YFKI

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.