Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85906 | Sorghum | cytosol | 25.81 | 48.98 |
| CDY40748 | Canola | plastid | 98.92 | 31.4 |
| Bra028658.1-P | Field mustard | plastid | 98.92 | 30.67 |
| CDX81102 | Canola | endoplasmic reticulum, vacuole | 97.85 | 30.54 |
| Solyc08g081080.2.1 | Tomato | cytosol | 81.72 | 27.44 |
| CDY60226 | Canola | cytosol | 97.85 | 27.41 |
| VIT_10s0071g01140.t01 | Wine grape | nucleus | 86.02 | 26.94 |
| AT5G08400.1 | Thale cress | plastid | 95.7 | 26.73 |
| KRG93163 | Soybean | nucleus | 84.95 | 26.25 |
| KRH64843 | Soybean | nucleus | 84.95 | 25.99 |
| PGSC0003DMT400031818 | Potato | plastid | 81.72 | 24.84 |
| GSMUA_Achr3P00100_001 | Banana | plastid | 77.42 | 22.71 |
| Zm00001d051851_P005 | Maize | plastid | 67.74 | 22.66 |
| Os02t0827600-01 | Rice | mitochondrion | 65.59 | 22.1 |
| EES07795 | Sorghum | plastid | 67.74 | 22.03 |
| TraesCS6B01G408300.1 | Wheat | mitochondrion, plastid | 64.52 | 21.35 |
| TraesCS6A01G371300.1 | Wheat | plastid | 63.44 | 21.0 |
| TraesCS6D01G355200.1 | Wheat | plastid | 63.44 | 20.42 |
| HORVU6Hr1G087420.4 | Barley | plastid | 62.37 | 19.73 |
| CDY43498 | Canola | plastid | 43.01 | 13.51 |
| CDY06810 | Canola | plastid | 43.01 | 13.42 |
Protein Annotations
| EnsemblPlants:CDY44774 | EnsemblPlantsGene:GSBRNA2T00080773001 | InterPro:DUF3531 | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF13 | PFAM:PF12049 |
| ProteinID:CDY44774 | ProteinID:CDY44774.1 | UniParc:UPI0004EE17BF | UniProt:A0A078I5M9 | MapMan:35.2 | : |
Description
BnaC02g01130DBnaC02g01130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5M9]
Coordinates
chrLK032601:-:47988..48451
Molecular Weight (calculated)
10688.5 Da
IEP (calculated)
3.950
GRAVY (calculated)
-0.224
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MEYDPLYDAE KGFKVMPSSF HDISDVEFQD NWGRVWVDLG TSDIFALDVL LNSLTVVSSE YLGIQQVVFG GKRMGDWEEG MTDPDFGYKY FKI
001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKYL
101: FLSFSFALQV FVFLPKSRES VNLFLVNDKC RVLESACKDD EELRAVLGDS IGNPELMRKK VEERVRKKGK DFQKQKTGSV LSFKVNFRDF NPVDSFIWFE
201: LYGTPSDRDV DLIGSVIQAW YVMGRLGAFN TSNLQLANTS LEYDPLYDAE KGFKVMPSSF HDISDVEFQD NWGRVWVDLG TSDIFALDVL LNCLTVMSSE
301: YLGIQQVVFG GKRMGDWEEG MTNPDFGYKY FKI
101: FLSFSFALQV FVFLPKSRES VNLFLVNDKC RVLESACKDD EELRAVLGDS IGNPELMRKK VEERVRKKGK DFQKQKTGSV LSFKVNFRDF NPVDSFIWFE
201: LYGTPSDRDV DLIGSVIQAW YVMGRLGAFN TSNLQLANTS LEYDPLYDAE KGFKVMPSSF HDISDVEFQD NWGRVWVDLG TSDIFALDVL LNCLTVMSSE
301: YLGIQQVVFG GKRMGDWEEG MTNPDFGYKY FKI
Arabidopsis Description
At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.