CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44774	Canola	cytosol	27.41	97.85
Bra005991.1-P	Field mustard	cytosol	94.28	94.56
CDX81102	Canola	endoplasmic reticulum, vacuole	75.6	84.23
CDY40748	Canola	plastid	71.99	81.57
OQU85906	Sorghum	cytosol	11.75	79.59
Solyc08g081080.2.1	Tomato	cytosol	61.75	74.01
VIT_10s0071g01140.t01	Wine grape	nucleus	63.86	71.38
AT5G08400.1	Thale cress	plastid	71.39	71.17
PGSC0003DMT400031818	Potato	plastid	62.35	67.65
KRG93163	Soybean	nucleus	61.14	67.44
KRH64843	Soybean	nucleus	60.84	66.45
GSMUA_Achr3P00100_001	Banana	plastid	61.45	64.35
Zm00001d051851_P005	Maize	plastid	52.41	62.59
EES07795	Sorghum	plastid	53.92	62.59
Os02t0827600-01	Rice	mitochondrion	50.0	60.14
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	50.6	59.79
TraesCS6A01G371300.1	Wheat	plastid	49.7	58.72
TraesCS6D01G355200.1	Wheat	plastid	50.6	58.13
HORVU6Hr1G087420.4	Barley	plastid	50.9	57.48
CDY06810	Canola	plastid	27.71	30.87
CDY43498	Canola	plastid	27.41	30.74

Protein Annotations

EnsemblPlants:CDY60226	EnsemblPlantsGene:GSBRNA2T00028359001	InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF13	PFAM:PF12049
ProteinID:CDY60226	ProteinID:CDY60226.1	SEG:seg	UniParc:UPI0004EEFB98	UniProt:A0A078J6G5	MapMan:35.2

Description

BnaA03g55710DBnaA03g55710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6G5]

Coordinates

chrLK033857:-:6567..8224

Molecular Weight (calculated)

37634.7 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.412

Length

332 amino acids

Sequence
(BLAST)

001: MITMSLISEN GADFIILNLS LISYRNEHRS KKEAEMYKSP LLSLSACTIS LNIHFLVSKS QTLSLYKRNL PSLFAVSANS DNISGENDGG MSEANKGSGT
101: TARGRRLLKV REEKRKRDYD RLHDYPSWAK VLESACKDDE ELRAVLGDSI GNPDLMRKKV EERVRKKGKD FQKQKTGSVL SFKVSFRDFN PVDSFIWFEL
201: YGSPSDRDVD LIGSVIQAWY VMGRLGAFNT SNLQLANSSM EYDPLYDAEK GFKVMPSSFH DISDVEFQDN WGRVWVDLGT SDIFALDVLL NSLTVMSSEY
301: LGIQQVVFGG KRMGDWEEGM TNPDFGYKYF KI

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.