Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44774 | Canola | cytosol | 30.54 | 97.85 |
| CDY40748 | Canola | plastid | 84.56 | 86.01 |
| OQU85906 | Sorghum | cytosol | 13.09 | 79.59 |
| CDY60226 | Canola | cytosol | 84.23 | 75.6 |
| Solyc08g081080.2.1 | Tomato | cytosol | 69.46 | 74.73 |
| AT5G08400.1 | Thale cress | plastid | 83.22 | 74.47 |
| VIT_10s0071g01140.t01 | Wine grape | nucleus | 70.47 | 70.71 |
| PGSC0003DMT400031818 | Potato | plastid | 71.14 | 69.28 |
| KRG93163 | Soybean | nucleus | 67.79 | 67.11 |
| KRH64843 | Soybean | nucleus | 67.79 | 66.45 |
| GSMUA_Achr3P00100_001 | Banana | plastid | 68.46 | 64.35 |
| Zm00001d051851_P005 | Maize | plastid | 59.06 | 63.31 |
| EES07795 | Sorghum | plastid | 60.4 | 62.94 |
| Os02t0827600-01 | Rice | mitochondrion | 56.38 | 60.87 |
| TraesCS6A01G371300.1 | Wheat | plastid | 57.05 | 60.5 |
| TraesCS6B01G408300.1 | Wheat | mitochondrion, plastid | 56.71 | 60.14 |
| TraesCS6D01G355200.1 | Wheat | plastid | 57.72 | 59.52 |
| HORVU6Hr1G087420.4 | Barley | plastid | 57.72 | 58.5 |
| CDY06810 | Canola | plastid | 29.53 | 29.53 |
| CDY43498 | Canola | plastid | 29.19 | 29.39 |
Protein Annotations
| EnsemblPlants:CDX81102 | EnsemblPlantsGene:GSBRNA2T00134548001 | InterPro:DUF3531 | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF13 | PFAM:PF12049 |
| ProteinID:CDX81102 | ProteinID:CDX81102.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EF44C1 | MapMan:35.2 |
Description
BnaC03g03560D
Coordinates
chrLK031823:-:1730302..1732011
Molecular Weight (calculated)
33724.0 Da
IEP (calculated)
7.560
GRAVY (calculated)
-0.441
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSHILSLS LPCLNLVFSP FLASQRQPFS LHKRNLPSLV AVSSNSDNVA GENGGGMSEA KKGSGTTARG RRLLKVREEK RKRDYDRLHD YPSWAKVLES
101: ACKDDEELRA VLGDSIGNPE LMRKKVEERV RKKGKDFQKQ KTGSVLSFKV SFRDFNPVDS FIWFELYGSP SDRDVDLFGS VIQAWYVMGR LGAFNTSNLQ
201: LANSSMEYDP LYDAEKGFKV MPSSFHDISD VEFQDNWGRV WVDLGTSDIF ALDVLLNSLT VVGSEYLGIQ QVVFGGKRMG DWEEGMTNPD FGYKYFKI
101: ACKDDEELRA VLGDSIGNPE LMRKKVEERV RKKGKDFQKQ KTGSVLSFKV SFRDFNPVDS FIWFELYGSP SDRDVDLFGS VIQAWYVMGR LGAFNTSNLQ
201: LANSSMEYDP LYDAEKGFKV MPSSFHDISD VEFQDNWGRV WVDLGTSDIF ALDVLLNSLT VVGSEYLGIQ QVVFGGKRMG DWEEGMTNPD FGYKYFKI
001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI
Arabidopsis Description
At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.