CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43498	Canola	plastid	85.57	86.15
VIT_11s0016g02630.t01	Wine grape	cytosol	51.01	76.38
AT4G29400.1	Thale cress	plastid	73.49	72.52
Solyc10g045310.1.1	Tomato	nucleus	53.69	69.87
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	55.37	55.37
Os01t0558800-01	Rice	plastid	48.32	51.25
Zm00001d011166_P001	Maize	plastid	48.99	50.52
GSMUA_Achr8P24980_001	Banana	plastid	55.03	50.31
KRH44778	Soybean	plastid	52.35	49.68
KRH37622	Soybean	nucleus	52.01	48.14
TraesCS3D01G206900.1	Wheat	plastid	44.3	47.83
EES06656	Sorghum	plastid	45.97	46.76
TraesCSU01G050100.1	Wheat	plastid	33.22	44.2
CDY44774	Canola	cytosol	13.42	43.01
HORVU3Hr1G048210.5	Barley	plastid	35.23	36.97
CDY40748	Canola	plastid	30.87	31.4
CDX81102	Canola	endoplasmic reticulum, vacuole	29.53	29.53
CDY60226	Canola	cytosol	30.87	27.71

Protein Annotations

EnsemblPlants:CDY06810	EnsemblPlantsGene:GSBRNA2T00123052001	InterPro:DUF3531	ncoils:Coil	PANTHER:PTHR33102	PANTHER:PTHR33102:SF2
PFAM:PF12049	ProteinID:CDY06810	ProteinID:CDY06810.1	SEG:seg	UniParc:UPI0004EEF6E1	MapMan:35.2

Description

BnaC01g09090D

Coordinates

chrLK031973:-:409014..410754

Molecular Weight (calculated)

34217.1 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.610

Length

298 amino acids

Sequence
(BLAST)

001: MISFQCSLHL LQPYCSASYN NQSNICFHNL APFRVSSTIQ VPKIHAVRAD WSTRSVKVRV NGIGRELEED GEEFEEEEEE EEEEFTSRKR ESYGGKKEDI
101: NYDKDPEFAD ILGDCLDNPE KAQKKMEERL RKKRNKILHT KTGSATSMQV TFNKFEYSNS YMWLEFHNPP LDKDIALITD AIRSWHILGR LGGYNSMNMQ
201: LSQAPVDERP NYDAILGANI EPTTFYNIGD LEVQDNVARI WLDIGTSEPL ILDVLINALT QISSDYVGIK KVVFGGSEFE NWKENLTSEE SGFRVHKI

Best Arabidopsis Sequence Match ( AT4G29400.1 )
(BLAST)

001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI

Arabidopsis Description

Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.