CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29400.1	KRH10294	AT3G46090.1	17259181
AT4G29400.1	KRH23029	AT3G46090.1	17259181
AT4G29400.1	KRH24840	AT3G46090.1	17259181
AT4G29400.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37622	Soybean	nucleus	81.21	79.19
VIT_11s0016g02630.t01	Wine grape	cytosol	49.36	77.89
Solyc10g045310.1.1	Tomato	nucleus	49.36	67.69
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	51.59	54.36
Bra011105.1-P	Field mustard	plastid	49.68	52.7
CDY43498	Canola	plastid	49.68	52.7
CDY06810	Canola	plastid	49.68	52.35
Os01t0558800-01	Rice	plastid	46.82	52.31
GSMUA_Achr8P24980_001	Banana	plastid	53.82	51.84
AT4G29400.1	Thale cress	plastid	49.36	51.32
Zm00001d011166_P001	Maize	plastid	46.82	50.87
EES06656	Sorghum	plastid	46.82	50.17
TraesCS3D01G206900.1	Wheat	plastid	42.68	48.55
TraesCSU01G050100.1	Wheat	plastid	31.85	44.64
HORVU3Hr1G048210.5	Barley	plastid	30.89	34.15
KRG93163	Soybean	nucleus	29.62	30.9
KRH64843	Soybean	nucleus	28.98	29.93

Protein Annotations

EMBL:ACUP02004958	EnsemblPlants:KRH44778	EnsemblPlantsGene:GLYMA_08G230800	EntrezGene:100795569	InterPro:DUF3531	PANTHER:PTHR33102
PANTHER:PTHR33102:SF2	PFAM:PF12049	ProteinID:KRH44778	ProteinID:KRH44778.1	ProteinID:KRH44779.1	ProteinID:KRH44780.1
ProteinID:KRH44781.1	ProteinID:KRH44782.1	SEG:seg	UniParc:UPI000295C48C	UniProt:K7L8A3	MapMan:35.2

Description

hypothetical protein

Coordinates

chr8:-:18910731..18918114

Molecular Weight (calculated)

35138.3 Da

IEP (calculated)

4.871

GRAVY (calculated)

-0.441

Length

314 amino acids

Sequence
(BLAST)

001: MIVLHPCALL PSCTTITCFK PFSHNNRFVP SSMVPRLALS YARTRTFSCS ARNRLKDLNG RDFSIDIVNE NLELEDDGGD DGFSARGLYA RSEANDTDEE
101: EAQKDGDGGY SGSPGKDYDR DPELGNILGS FLENPQEAQS KLEDRLRKKR SKILHTKTGS GKPMKVSFNK FDFSNSYIWF EFYNVPLAKD VSLICNTIRA
201: WHIIGRLGGC NAMNMQLSQS PMDARPSYDY IQGANVEPTT FYNIGDLEVQ DNLARIWVDI GTVEPLLLNV LINALTQISS DFVGIKQVMF GGSEFENWNE
301: NLKSEDAGYG VHKI

Best Arabidopsis Sequence Match ( AT4G29400.1 )
(BLAST)

001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI

Arabidopsis Description

Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.