Factsheet for Zm00001d011166_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06656	Sorghum	plastid	74.74	73.72
Os01t0558800-01	Rice	plastid	71.63	73.67
VIT_11s0016g02630.t01	Wine grape	cytosol	48.44	70.35
TraesCS3D01G206900.1	Wheat	plastid	62.63	65.58
Solyc10g045310.1.1	Tomato	nucleus	50.17	63.32
TraesCSU01G050100.1	Wheat	plastid	47.75	61.61
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	52.6	51.01
CDY06810	Canola	plastid	50.52	48.99
CDY43498	Canola	plastid	50.17	48.99
Bra011105.1-P	Field mustard	plastid	49.83	48.65
KRH44778	Soybean	plastid	50.87	46.82
AT4G29400.1	Thale cress	plastid	48.79	46.69
HORVU3Hr1G048210.5	Barley	plastid	45.67	46.48
KRH37622	Soybean	nucleus	50.87	45.65
GSMUA_Achr8P24980_001	Banana	plastid	51.21	45.4
Zm00001d051851_P005	Maize	plastid	33.22	34.53

Protein Annotations

EMBL:BT042482	EnsemblPlants:Zm00001d011166_P001	EnsemblPlants:Zm00001d011166_T001	EnsemblPlantsGene:Zm00001d011166	EntrezGene:100274170	InterPro:DUF3531
PANTHER:PTHR33102	PANTHER:PTHR33102:SF2	PFAM:PF12049	ProteinID:AQK96064.1	SEG:seg	UniParc:UPI00017B7C3D
UniProt:B4FZE4	MapMan:35.2	:	:	:	:

Description

Ribonuclease P protein component 3

Coordinates

chr8:-:141517174..141521112

Molecular Weight (calculated)

32248.2 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.284

Length

289 amino acids

Sequence
(BLAST)

001: MLLSAFLGDC LFSYPPPPLL PATTAAPRPS TRLPVPFPAR LRPASLVARR LTAEAGEALS ALSAAEGDDE YEAELQEEGF PSWAGGGEEE DYDHDPEIGD
101: IMGDYFDDPK KGQTRMEDRI RKKRHKIVQT KTGSPNPMKV VFNKFDFSNS YIWFEFYNVL LPKDVTLISD SLRSWHIVGR LGGCNSMNMQ LSQLPLDCKR
201: LTYDALEGAN VTPTSFYNIG DLEIQDNLAR VWVDIGIHEP LLLDILLNAL TTISSDHVGI KQVQFGGSEF LNWSEDLKTE EVGYSVCKI

Best Arabidopsis Sequence Match ( AT4G29400.1 )
(BLAST)

001: MLRFQCFLHL LQPSMAKNNS NHSNICLHNL APFRVTDTIP VQKIQELRAN RSRESGKLRV NGIGREMEEG VEEFEEVDDG DDDEVEDEFS AKKRGVYRAK
101: KEKIDYDKDP EFADILGDCL DNPDKAQKKM EERLRKKRNK ILHTKTGSAT SMPVTFNKFE YSNSYMWLEF YNTPLDKDIA LISDTIRSWH ILGRLGGYNS
201: MNMQLSQAPL DKRPNYDAIL GANVEPTTFY NIGDLEVQDN VARIWLDIGT SEPLILDVLI NALTQISSDY VGIKKVVFGG SEFESWKENM TSEESGFRVH
301: KI

Arabidopsis Description

Oxidoreductase/transition metal ion-binding protein (DUF3531) [Source:UniProtKB/TrEMBL;Acc:Q5XV66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.