Factsheet for PGSC0003DMT400031818

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
plasma membrane 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081080.2.1	Tomato	cytosol	83.33	92.06
CDY44774	Canola	cytosol	24.84	81.72
OQU85906	Sorghum	cytosol	11.44	71.43
CDX81102	Canola	endoplasmic reticulum, vacuole	69.28	71.14
CDY40748	Canola	plastid	67.65	70.65
Bra028658.1-P	Field mustard	plastid	68.63	70.0
VIT_10s0071g01140.t01	Wine grape	nucleus	67.32	69.36
KRG93163	Soybean	nucleus	64.05	65.12
KRH64843	Soybean	nucleus	63.73	64.14
Bra005991.1-P	Field mustard	cytosol	67.65	62.54
CDY60226	Canola	cytosol	67.65	62.35
AT5G08400.1	Thale cress	plastid	67.65	62.16
GSMUA_Achr3P00100_001	Banana	plastid	64.05	61.83
Zm00001d051851_P005	Maize	plastid	53.59	58.99
Os02t0827600-01	Rice	mitochondrion	52.61	58.33
EES07795	Sorghum	plastid	53.59	57.34
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	52.29	56.94
TraesCS6A01G371300.1	Wheat	plastid	51.63	56.23
TraesCS6D01G355200.1	Wheat	plastid	52.29	55.36
HORVU6Hr1G087420.4	Barley	plastid	51.63	53.74
PGSC0003DMT400074006	Potato	cytosol, mitochondrion	30.07	30.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400031818	EnsemblPlantsGene:PGSC0003DMG400012207	EntrezGene:102598694	InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF13
PFAM:PF12049	PGSC:PGSC0003DMG400012207	RefSeq:XP_006343980.1	SEG:seg	UniParc:UPI000296BA07	UniProt:M1AWB0
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012207]

Coordinates

chr8:-:54805144..54809206

Molecular Weight (calculated)

34409.7 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.327

Length

306 amino acids

Sequence
(BLAST)

001: MSVVNQQFFN PIWKPCVSSC PLLAAQLLVM PMSNRELSVL STIAAAKSTA SIGEGNDDYV DISSGRAAAK GSGTTARGRR LLKVREEKRK REYERLHNYP
101: AWAKVLEDAC KHDTELRAVL GDSIGNPELM RKKVEERVRT KGQNFQKSKT GSVLSFKVSF RDFNPLDSYI WFELYGSPSD RDVNIFGSVI QAWYVMGRLG
201: AFNSSNLQLG GSSMEFNPLY DAEKGFNVMP SSFHDISNVE FQDNWSRVWV DLGTADFFSI DVLLNCLTVL SSEYIGIQQV VFGGQRMGDW EEGMTNSDDG
301: YKYFEI

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.