Factsheet for VIT_10s0071g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
plasma membrane 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44774	Canola	cytosol	26.94	86.02
Solyc08g081080.2.1	Tomato	cytosol	69.36	74.37
OQU85906	Sorghum	cytosol	12.12	73.47
CDY40748	Canola	plastid	71.72	72.7
KRH64843	Soybean	nucleus	72.73	71.05
KRG93163	Soybean	nucleus	71.72	70.76
CDX81102	Canola	endoplasmic reticulum, vacuole	70.71	70.47
Bra028658.1-P	Field mustard	plastid	71.04	70.33
PGSC0003DMT400031818	Potato	plastid	69.36	67.32
GSMUA_Achr3P00100_001	Banana	plastid	71.38	66.88
CDY60226	Canola	cytosol	71.38	63.86
Bra005991.1-P	Field mustard	cytosol	71.04	63.75
AT5G08400.1	Thale cress	plastid	71.38	63.66
Zm00001d051851_P005	Maize	plastid	58.25	62.23
EES07795	Sorghum	plastid	58.25	60.49
Os02t0827600-01	Rice	mitochondrion	55.56	59.78
TraesCS6A01G371300.1	Wheat	plastid	55.56	58.72
TraesCS6B01G408300.1	Wheat	mitochondrion, plastid	55.56	58.72
TraesCS6D01G355200.1	Wheat	plastid	56.23	57.79
HORVU6Hr1G087420.4	Barley	plastid	56.23	56.8
VIT_11s0016g02630.t01	Wine grape	cytosol	27.61	41.21

Protein Annotations

ArrayExpress:VIT_10s0071g01140	EMBL:FN596260	EnsemblPlants:VIT_10s0071g01140.t01	EnsemblPlantsGene:VIT_10s0071g01140	EntrezGene:100262808	EntrezGene:LOC100262808
InterPro:DUF3531	PANTHER:PTHR33102	PANTHER:PTHR33102:SF13	PFAM:PF12049	ProteinID:CCB58841	ProteinID:CCB58841.1
RefSeq:XP_002271050	RefSeq:XP_002271050.1	SEG:seg	unigene:Vvi.2306	UniParc:UPI0001985917	UniProt:F6HVX8
wikigene:100262808	wikigene:LOC100262808	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr10:+:17937622..17954200

Molecular Weight (calculated)

33741.1 Da

IEP (calculated)

7.950

GRAVY (calculated)

-0.528

Length

297 amino acids

Sequence
(BLAST)

001: MNMVCCKPHH LPWKPLSPPL FPNLNDTING KNKHPMVLTM SSSSIAGSLS DENEAGVPKG KGSGTTARGR RLLKLREEKR KREYDRLHNY PAWAKVMEDA
101: CKDDSELRAV LGDSIGNPEL MRKRVEERVR KKGRDFRKSK TGSVLAYKVS FRDFNPVDSY IWFELYGSPS DRDVDLIGSV IQSWYVMGRL GAFNSSNLQL
201: ANSSMEYNPL YDADKGFKLM PSSFHDIGDV EFQDNWGRVW VDLGTSDFFA IDVLLNCLTV LSSEYLGIQQ VVFGGRNMGD WEEGMTSPEY GYKYFKI

Best Arabidopsis Sequence Match ( AT5G08400.2 )
(BLAST)

001: MYENNLLTLS SCTMNLNFAF SPFLVSQRQP FSSHKRNLHT LVAVSANSDN LAGEDNGGIS AANKGSGTTA RGRRLLKVRE EKRKRDYDRL HDYPSWAKVL
101: ESACKDDEEL RAVLGDSIGN PELMRKKVEE RVRKKGKDFQ KQKTGSVLSF KVNFRDFNPV DSFIWFELYG TPSDRDVDLI GSVIQAWYVM GRLGAFNTSN
201: LQLANTSLEY DPLYDAEKGF KVMPSSFHDI SDVEFQDNWG RVWVDLGTSD IFALDVLLNC LTVMSSEYLG IQQVVFGGKR MGDWEEGMTN PDFGYKYFKI

Arabidopsis Description

At5g08400/F8L15_130 [Source:UniProtKB/TrEMBL;Acc:Q8VZD1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.