Factsheet for Solyc07g007870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
peroxisome 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067090.2.1
Solyc05g013740.2.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	Solyc02g067090.2.1	AT1G13030.1	21798944
AT2G06050.1	Solyc05g013740.2.1	AT1G13030.1	21798944
AT2G06050.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G06050.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079356	Potato	plastid	97.98	97.0
VIT_11s0016g01230.t01	Wine grape	plastid	79.55	79.15
KRH19303	Soybean	nucleus	76.77	76.38
KRH02619	Soybean	nucleus	76.01	75.63
AT2G06050.1	Thale cress	cytosol, plastid	73.99	74.94
CDY50415	Canola	peroxisome	72.22	73.52
CDX93099	Canola	peroxisome	71.97	73.26
Os08t0459600-01	Rice	cytosol	72.73	73.1
Bra013161.1-P	Field mustard	peroxisome	71.46	72.75
KRH02618	Soybean	mitochondrion	69.95	72.7
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	71.46	72.56
TraesCS7D01G405500.1	Wheat	golgi	71.21	72.31
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	71.21	72.31
KRH19304	Soybean	mitochondrion, plastid	69.7	71.13
Zm00001d050107_P001	Maize	extracellular, mitochondrion	71.46	70.93
Zm00001d032049_P002	Maize	extracellular, mitochondrion	71.21	70.68
EES13971	Sorghum	peroxisome, plastid	71.72	70.65
GSMUA_Achr7P02310_001	Banana	mitochondrion	58.59	67.64
TraesCS5B01G487600.1	Wheat	mitochondrion	62.63	65.09
HORVU7Hr1G095960.1	Barley	plastid	71.72	58.68
Solyc11g032130.1.1	Tomato	mitochondrion	51.52	57.63
Solyc10g086220.1.1	Tomato	extracellular	53.03	55.85
Solyc04g039920.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	11.11	50.57
Solyc11g032220.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	37.88	50.34
Solyc11g032230.1.1	Tomato	cytosol	40.15	48.62
Solyc04g039910.1.1	Tomato	cytosol	28.28	45.71
Solyc01g103390.2.1	Tomato	plastid	39.65	44.23
Solyc04g039930.2.1	Tomato	cytosol	12.12	39.34
Solyc09g098320.1.1	Tomato	mitochondrion	15.91	38.65

Protein Annotations

MapMan:11.7.1.6	PDB:2HS6	PDB:2HS8	PDB:2HSA	Gene3D:3.20.20.70	PDB:3HGO
PDB:3HGS	EMBL:AJ278332	InterPro:Aldolase_TIM	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009695	GO:GO:0009987	GO:GO:0010181	GO:GO:0016491	GO:GO:0016629
GO:GO:0031408	GO:GO:0042802	GO:GO:0055114	InterPro:IPR013785	InterPro:OxRdtase_FMN_N	PFAM:PF00724
PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	UniProt:Q9FEW9	SUPFAM:SSF51395	EnsemblPlantsGene:Solyc07g007870.2	EnsemblPlants:Solyc07g007870.2.1
UniParc:UPI000009F2B3	:	:	:	:	:

Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FEW9]

Coordinates

chr7:+:2549365..2554937

Molecular Weight (calculated)

43523.0 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.246

Length

396 amino acids

Sequence
(BLAST)

001: MASSAQDGNN PLFSPYKMGK FNLSHRVVLA PMTRCRALNN IPQAALGEYY EQRATAGGFL ITEGTMISPT SAGFPHVPGI FTKEQVREWK KIVDVVHAKG
101: AVIFCQLWHV GRASHEVYQP AGAAPISSTE KPISNRWRIL MPDGTHGIYP KPRAIGTYEI SQVVEDYRRS ALNAIEAGFD GIEIHGAHGY LIDQFLKDGI
201: NDRTDEYGGS LANRCKFITQ VVQAVVSAIG ADRVGVRVSP AIDHLDAMDS NPLSLGLAVV ERLNKIQLHS GSKLAYLHVT QPRYVAYGQT EAGRLGSEEE
301: EARLMRTLRN AYQGTFICSG GYTRELGIEA VAQGDADLVS YGRLFISNPD LVMRIKLNAP LNKYNRKTFY TQDPVVGYTD YPFLQGNGSN GPLSRL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.