Factsheet for PGSC0003DMT400079356

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400064747
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	PGSC0003DMT400064747	AT1G13030.1	21798944
AT2G06050.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT2G06050.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007870.2.1	Tomato	plastid	97.0	97.98
VIT_11s0016g01230.t01	Wine grape	plastid	77.75	78.14
KRH19303	Soybean	nucleus	75.25	75.63
AT2G06050.1	Thale cress	cytosol, plastid	73.0	74.68
KRH02619	Soybean	nucleus	74.0	74.37
CDY50415	Canola	peroxisome	70.5	72.49
CDX93099	Canola	peroxisome	70.25	72.24
KRH02618	Soybean	mitochondrion	68.5	71.92
Os08t0459600-01	Rice	cytosol	70.75	71.83
Bra013161.1-P	Field mustard	peroxisome	69.75	71.72
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	69.5	71.28
TraesCS7D01G405500.1	Wheat	golgi	69.25	71.03
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	69.25	71.03
KRH19304	Soybean	mitochondrion, plastid	68.25	70.36
Zm00001d050107_P001	Maize	extracellular, mitochondrion	70.0	70.18
Zm00001d032049_P002	Maize	extracellular, mitochondrion	69.75	69.92
EES13971	Sorghum	peroxisome, plastid	70.25	69.9
GSMUA_Achr7P02310_001	Banana	mitochondrion	57.25	66.76
TraesCS5B01G487600.1	Wheat	mitochondrion	60.75	63.78
HORVU7Hr1G095960.1	Barley	plastid	69.75	57.64
PGSC0003DMT400048328	Potato	cytosol	25.5	55.43
PGSC0003DMT400048331	Potato	mitochondrion	48.25	55.3
PGSC0003DMT400048344	Potato	cytosol	50.75	54.28
PGSC0003DMT400048327	Potato	cytosol	24.25	54.19
PGSC0003DMT400080542	Potato	extracellular	15.0	53.1
PGSC0003DMT400048325	Potato	cytosol	16.25	50.0
PGSC0003DMT400007644	Potato	extracellular, mitochondrion	39.25	50.0
PGSC0003DMT400064103	Potato	cytosol, nucleus, peroxisome, plastid	33.25	43.18
PGSC0003DMT400055707	Potato	peroxisome	39.75	41.3
PGSC0003DMT400072012	Potato	cytosol	14.5	39.46
PGSC0003DMT400082779	Potato	cytosol	6.25	38.46

Protein Annotations

MapMan:11.7.1.6	Gene3D:3.20.20.70	ProteinID:AER51971	ProteinID:AER51971.1	InterPro:Aldolase_TIM	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009695	GO:GO:0009987	GO:GO:0010181	GO:GO:0016491	GO:GO:0016629	GO:GO:0031408
GO:GO:0055114	InterPro:IPR013785	EMBL:JN241968	UniProt:M1D1P1	InterPro:OxRdtase_FMN_N	PFAM:PF00724
EnsemblPlantsGene:PGSC0003DMG400030890	PGSC:PGSC0003DMG400030890	EnsemblPlants:PGSC0003DMT400079356	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	SUPFAM:SSF51395
UniParc:UPI0002966E7B	:	:	:	:	:

Description

12-oxophytodienoate reductase 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400030890]

Coordinates

chr7:+:4054349..4059301

Molecular Weight (calculated)

43882.3 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.245

Length

400 amino acids

Sequence
(BLAST)

001: MAKTTSSSAQ DGNNPLFSAY KMGKFNLSHR IVLAPMTRCR ALNNIPQAAL GEYYEQRATA GGFLITEGTM ISPTSAGFPH VPGIFTKEQV EEWKKIVDVV
101: HAKGAVIFCQ LWHVGRASHE VYQPAGAAPI SSTEKPISKR WRILMPDGTH GIYPKPRAIG TYDISQVVED YRRSALNAIE AGFDGIEIHG AHGYLIDQFL
201: KDGINDRTDE YGGSLANRCK FITQVVQAVV SAIGADRVGV RVSPAIDHLD AMDSNPLSLG LAVVERLNKI QLHSGSKLAY LHVTQPRYVA YGQTEAGRLG
301: SEEEEAHLMR TLRNAYQGTF ICSGGYTREL GIEAVAQGDA DLVSYGRLFI SNPDLVMRIK LNAPLNKYNR KTFYTQDPVV GYTDYPFLQG NGSNGPLSRL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.