CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97521
KRH10294
KRH23029
KRH24840
KRH29844
KRH31353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06050.1	KRG97521	AT1G13030.1	21798944
AT2G06050.1	KRH31353	AT1G13030.1	21798944
AT2G06050.1	KRH10294	AT3G46090.1	17259181
AT2G06050.1	KRH23029	AT3G46090.1	17259181
AT2G06050.1	KRH24840	AT3G46090.1	17259181
AT2G06050.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19303	Soybean	nucleus	97.74	97.74
KRH19304	Soybean	mitochondrion, plastid	80.15	82.22
KRH02618	Soybean	mitochondrion	78.14	81.63
VIT_11s0016g01230.t01	Wine grape	plastid	77.64	77.64
Solyc07g007870.2.1	Tomato	plastid	75.63	76.01
Os08t0459600-01	Rice	cytosol	74.62	75.38
TraesCS7D01G405500.1	Wheat	golgi	73.62	75.13
TraesCS7B01G311600.1	Wheat	mitochondrion, peroxisome	73.37	74.87
TraesCS7A01G412400.1	Wheat	mitochondrion, peroxisome	73.12	74.62
EES13971	Sorghum	peroxisome, plastid	75.13	74.38
AT2G06050.1	Thale cress	cytosol, plastid	72.86	74.17
PGSC0003DMT400079356	Potato	plastid	74.37	74.0
Zm00001d032049_P002	Maize	extracellular, mitochondrion	74.12	73.93
Zm00001d050107_P001	Maize	extracellular, mitochondrion	74.12	73.93
CDY50415	Canola	peroxisome	71.86	73.52
CDX93099	Canola	peroxisome	71.86	73.52
Bra013161.1-P	Field mustard	peroxisome	71.61	73.26
GSMUA_Achr7P02310_001	Banana	mitochondrion	60.05	69.68
TraesCS5B01G487600.1	Wheat	mitochondrion	64.32	67.19
HORVU7Hr1G095960.1	Barley	plastid	74.12	60.95
KRG94044	Soybean	cytosol	52.51	57.26
KRH27669	Soybean	mitochondrion, plastid	52.01	55.8
KRH13220	Soybean	mitochondrion, peroxisome, plastid	49.25	54.29
KRH20560	Soybean	mitochondrion	48.24	52.32
KRH51591	Soybean	cytosol	49.25	52.27
KRH77822	Soybean	nucleus	52.01	51.49
KRH05151	Soybean	nucleus	43.97	49.72
KRH17523	Soybean	cytosol	47.74	48.35
KRH63555	Soybean	mitochondrion	8.54	44.16
KRH51594	Soybean	cytosol	7.79	39.74
KRH06010	Soybean	mitochondrion	15.33	34.66

Protein Annotations

EntrezGene:100803581	MapMan:11.7.1.6	Gene3D:3.20.20.70	EMBL:ACUP02010312	InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_17G050000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
UniProt:I1MSB3	InterPro:IPR013785	EnsemblPlants:KRH02619	ProteinID:KRH02619	ProteinID:KRH02619.1	InterPro:OxRdtase_FMN_N
PFAM:PF00724	PANTHER:PTHR22893	PANTHER:PTHR22893:SF67	SUPFAM:SSF51395	UniParc:UPI000233E6B9	:

Description

hypothetical protein

Coordinates

chr17:-:3790052..3794126

Molecular Weight (calculated)

44194.7 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.298

Length

398 amino acids

Sequence
(BLAST)

001: MADNSTAQGS NTLFSPYKMP KFNLSHRVVL APMTRCRALN WIPQEALAEY YAQRSTPGGF LISEGTLISL TAPGFPHVPG IYSDEQVEAW RNIVDAVHAK
101: GSIIFCQLWH VGRASHPVYQ PGGAPPISST SKPISARWRI LLPDGSYGVY PEPRALATSE IPEIVQNYRQ AAINAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDEYGG SLANRCRFLM QVVQAVVSAI GAERVAVRIS PAIDHLDAID SDPLKLGLAV VERLNNFQKE LGRKLTYLHV TQPRYTAYGQ TESGRPGSEE
301: EETRLMQNLR KAYEGTFMCS GGFTRKLGME AVAEGHADLV SYGRLFISNP DLVLRLKLNA PLTKYNRKTF YTQDPVIGYT DYPFLSKESE TKEPRARL

Best Arabidopsis Sequence Match ( AT2G06050.3 )
(BLAST)

001: MTAAQGNSNE TLFSSYKMGR FDLSHRVVLA PMTRCRALNG VPNAALAEYY AQRTTPGGFL ISEGTMVSPG SAGFPHVPGI YSDEQVEAWK QVVEAVHAKG
101: GFIFCQLWHV GRASHAVYQP NGGSPISSTN KPISENRWRV LLPDGSHVKY PKPRALEASE IPRVVEDYCL SALNAIRAGF DGIEIHGAHG YLIDQFLKDG
201: INDRTDQYGG SIANRCRFLK QVVEGVVSAI GASKVGVRVS PAIDHLDATD SDPLSLGLAV VGMLNKLQGV NGSKLAYLHV TQPRYHAYGQ TESGRQGSDE
301: EEAKLMKSLR MAYNGTFMSS GGFNKELGMQ AVQQGDADLV SYGRLFIANP DLVSRFKIDG ELNKYNRKTF YTQDPVVGYT DYPFLAPFSR L

Arabidopsis Description

OPR312-oxophytodienoate reductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUP0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.